PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0475s0019.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | C2H2 | ||||||||
Protein Properties | Length: 330aa MW: 37195.5 Da PI: 7.0114 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 19.3 | 3.2e-06 | 167 | 186 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 y+Cp C ksFsr nL+ H+ Kalax.0475s0019.1.p 167 YSCPLCFKSFSRYNNLQMHM 186 99*****************9 PP | |||||||
2 | zf-C2H2 | 17.2 | 1.4e-05 | 251 | 273 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +CgksF k + ++H +++ Kalax.0475s0019.1.p 251 FTCRKCGKSFAVKGDWRTHEKNC 273 89*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.74E-5 | 160 | 189 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 4.6E-6 | 167 | 186 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.616 | 167 | 194 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.21 | 167 | 189 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 169 | 189 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.7E-4 | 237 | 271 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.35E-5 | 237 | 271 | No hit | No description |
SMART | SM00355 | 28 | 251 | 271 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.891 | 251 | 271 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence Send to blast |
MKDFLSSNNS SVTCNGLSYF NFIPLNPNPN SLPRTLPLLD NLEPAQSSPA TTPMDEDYYC 60 GSCFCKNKRR SGRGSSSTNV ALSLNIGLPD DETYSSTVVS SSSSSSNLLE LHKSLFGDEP 120 FQEEGEEDEK EDHDDEMGLL ECIPLERNAT QYWIPTPTQI LNGPTQYSCP LCFKSFSRYN 180 NLQMHMWGHG SQYRKGTESL RGVQPRAMLR LPCYCCTQGC KHHIDHPKSR PLKDFRTLQT 240 HYKRKHGTKS FTCRKCGKSF AVKGDWRTHE KNCGKFWYCA CGSDFKHKRS LKDHVRAYKD 300 DGQAGHAAIG IEDYMEHDGD DHGCVIESE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator. {ECO:0000305|PubMed:20541552}. | |||||
UniProt | Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018807465.1 | 1e-103 | PREDICTED: zinc finger protein WIP2-like | ||||
Swissprot | Q8W030 | 3e-96 | ZWIP4_ARATH; Zinc finger protein WIP4 | ||||
Swissprot | Q9SVY1 | 2e-96 | ZWIP2_ARATH; Zinc finger protein WIP2 | ||||
TrEMBL | A0A2R6RD16 | 1e-103 | A0A2R6RD16_ACTCH; Zinc finger protein | ||||
STRING | Gorai.013G250800.1 | 1e-101 | (Gossypium raimondii) | ||||
STRING | XP_008795700.1 | 1e-101 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57670.1 | 1e-96 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0475s0019.1.p |
Publications ? help Back to Top | |||
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