PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0475s0016.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NF-YA
Protein Properties Length: 305aa    MW: 33331 Da    PI: 10.0815
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0475s0016.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.22.4e-32156212158
            CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                          +ep+YVNaKQy++I++RRq Rak+e ekk+ +k+rkpylheSRh+hA+rR+Rg+gGrF
  Kalax.0475s0016.2.p 156 EEPVYVNAKQYNGIMRRRQIRAKAELEKKV-IKNRKPYLHESRHQHAMRRARGCGGRF 212
                          69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.0E-37154215IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.986155215IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.0E-28157212IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006165.4E-23158180IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860160180IPR018362CCAAT-binding factor, conserved site
PRINTSPR006165.4E-23189212IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MMQMKAESGN QRAGYSQQSR WPGFENTDNS STGIRERSLR STSENVNLVT VGAIDSQFSS  60
SMNIAGNFNK VIPSGIALRP DGYSGQGNQT LTTSQSTMSE NPSESSQREL VDGSMVAASY  120
PYRDPSYGAI VPPYGQQALV YGVNQARMAL PLEMEEEPVY VNAKQYNGIM RRRQIRAKAE  180
LEKKVIKNRK PYLHESRHQH AMRRARGCGG RFLNTKKLNS ETSNSTSAAL DGTQHNGTLS  240
NQSILPRGLD TSMGHNIVSF GSSSSSSNIG GHDRSSRYQT LPGDAQAYSS MQMTGPPRRT  300
YPIT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-20156220266NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1Q3BGG81e-62A0A1Q3BGG8_CEPFO; CBFB_NFYA domain-containing protein
STRINGXP_006421429.14e-62(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20910.17e-41nuclear factor Y, subunit A9