PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Kalax.0475s0016.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
||||||||
Family | NF-YA | ||||||||
Protein Properties | Length: 330aa MW: 35966.9 Da PI: 9.9098 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 103 | 2.7e-32 | 156 | 212 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++I++RRq Rak+e ekk+ +k+rkpylheSRh+hA+rR+Rg+gGrF Kalax.0475s0016.1.p 156 EEPVYVNAKQYNGIMRRRQIRAKAELEKKV-IKNRKPYLHESRHQHAMRRARGCGGRF 212 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.0E-37 | 154 | 215 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 37.986 | 155 | 215 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 2.3E-28 | 157 | 212 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 5.8E-23 | 158 | 180 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 160 | 180 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 5.8E-23 | 189 | 212 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 330 aa Download sequence Send to blast |
MMQMKAESGN QRAGYSQQSR WPGFENTDNS STGIRERSLR STSENVNLVT VGAIDSQFSS 60 SMNIAGNFNK VIPSGIALRP DGYSGQGNQT LTTSQSTMSE NPSESSQREL VDGSMVAASY 120 PYRDPSYGAI VPPYGQQALV YGVNQARMAL PLEMEEEPVY VNAKQYNGIM RRRQIRAKAE 180 LEKKVIKNRK PYLHESRHQH AMRRARGCGG RFLNTKKLNS ETSNSTSAAL DGTQHNGTLS 240 NQSILPRGLG NNLPASSSGY LYPLTEPQNS SFIPDTSMGH NIVSFGSSSS SSNIGGHDRS 300 SRYQTLPGDA QAYSSMQMTG PPRRTYPIT* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 2e-18 | 156 | 220 | 2 | 66 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024044821.1 | 9e-63 | nuclear transcription factor Y subunit A-1 isoform X1 | ||||
Refseq | XP_024044824.1 | 9e-63 | nuclear transcription factor Y subunit A-1 isoform X1 | ||||
TrEMBL | A0A1Q3BGG8 | 5e-62 | A0A1Q3BGG8_CEPFO; CBFB_NFYA domain-containing protein | ||||
STRING | XP_006421429.1 | 9e-62 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G12840.4 | 2e-40 | nuclear factor Y, subunit A1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Kalax.0475s0016.1.p |