PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0473s0002.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | SBP | ||||||||
Protein Properties | Length: 353aa MW: 38762.5 Da PI: 8.1046 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 131.2 | 3.5e-41 | 200 | 277 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+egC+adls+ak+yhrrhkvCe+hsk+++v++ gl+qrfCqqCsrfh l+efD++krsCr+rLa+hn+rrrk+ + Kalax.0473s0002.1.p 200 RCQAEGCAADLSNAKHYHRRHKVCEFHSKSATVIAGGLTQRFCQQCSRFHLLTEFDNGKRSCRKRLADHNRRRRKTPQ 277 6**************************************************************************865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 7.0E-34 | 195 | 262 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.223 | 198 | 275 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.62E-38 | 199 | 277 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.5E-30 | 201 | 274 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009554 | Biological Process | megasporogenesis | ||||
GO:0009556 | Biological Process | microsporogenesis | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
MLEYEPWGNP SQMILGSAED DPAQVVSDHH GIDIFNTNGN SSNAHHSALS LDYAQAAAAT 60 DPHHHHHQGV TFSSSPNLNA FSQHHHHHHQ FFNADHQAAS LNALYDPRAF PSSYAPQHHF 120 DAALTGLNPN SAHPGGAGYF LVPKTEEDAA AGRQQGTRIG LNLGHRTYFS AQDDDFVNRL 180 YRRSRPGGMD ACGGSVNAPR CQAEGCAADL SNAKHYHRRH KVCEFHSKSA TVIAGGLTQR 240 FCQQCSRFHL LTEFDNGKRS CRKRLADHNR RRRKTPQQPS GQGQLELQKS PMDNSSSETL 300 TKSPPESSAL THPSSSVTIA ISPPRMTLEC FRQRSYREMA SSSSSSSVFY SN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-29 | 194 | 274 | 4 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00090 | SELEX | Transfer from AT1G02065 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006375255.1 | 1e-97 | squamosa promoter-binding-like protein 8 | ||||
TrEMBL | U5FUU6 | 3e-96 | U5FUU6_POPTR; SBP family protein | ||||
STRING | POPTR_0014s05680.1 | 5e-97 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02065.1 | 2e-73 | squamosa promoter binding protein-like 8 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0473s0002.1.p |