PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0472s0020.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

SBP

Protein Properties

Length: 977aa MW: 107022 Da PI: 5.814

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0472s0020.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	132.3	1.6e-41	146	222	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqve+C adls+ak+yhrrhkvCe+hska+ +lv +++qrfCqqCsrfh+l efDe+krsCrrrLa+hn+rrrk++ Kalax.0472s0020.1.p 146 VCQVEDCGADLSKAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHALPEFDEGKRSCRRRLAGHNKRRRKTN 222 6**************************************************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	3.2E-33	139	208	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.146	144	221	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	4.97E-38	146	223	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	6.7E-30	147	220	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	1.66E-5	753	860	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	1.1E-4	756	859	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	9.64E-5	757	860	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 977 aa Download sequence Send to blast
MEANVGDQIR HYYGLGSSSL NPVGKRSLEW DLNDWKWDGH QFVASPLNCK PSGYSSHQLL 60 PETGGSSNNS STCSDDATIG NDTREEELLR SRRAAAGGEV GDAGNLSLML GGNGVPASEM 120 QLTSWEGANG KKSKVVVGGS SSNRGVCQVE DCGADLSKAK DYHRRHKVCE MHSKASRALV 180 GNVMQRFCQQ CSRFHALPEF DEGKRSCRRR LAGHNKRRRK TNPLNVAPGT SLNDDQSNNY 240 LLLTLLKILA DLHSNRSDGA KNQDMLSHLL RSLEENTVAN GGKNITEAVC ALLSNGRQAL 300 ASSGGQHTLA MQEMPQNGSP SADVSPPPST VISIKDSPPG YSVAPSTAAG PVKLNTFDLN 360 DVYVDSADGI EDLEGFRVPA NNGNSSIGCP SWMQQDVHSS SPPQVSRNSD SGSAQSPSSS 420 SGGDQIRTDR IVFKLFGKEP CDFPLALRTQ ILDWLAHTPT DIESYIRPGC IVLTIYLRLA 480 ESVWDELCLD LSSSLSRLID VSEDSFWSTG WVYVRVQDQV AFICNGQVVL DTTSPYISSA 540 SRILSVRPIA IPMSEKASFS IKGCNLFPPN SRLLCAIEGQ YLAQENIPES LEESSSNHND 600 SDKLQVINYS CSIPAITGRG FVEVEEDNGL GRDFFPFIVA ESDLCSEIRM LESTLEPTET 660 DETSENGEPD ARSNAIDFIQ EMGWLLRRSQ LRLRFGYSNK RAEDLFHFDR FKWLMEFSLD 720 RDWCAVVKKL LDILCDGVVG SGEHDSLVAA VSDMGILHRA VRRNSRPLVE LLLRYVPEQT 780 SNNSMMKAGE LLFMPNEMGP AGLTPLHIAA GRDGAEAVLD ALTDDPNKVG IEAWQSARDS 840 TGASPEDYAR LRGHYSYIHL VQRKISKKSF TPGHVVLDIP NTLSDPKANK RETTTQKSSF 900 QISNFPMRTG SGPCKICDQK LIYRTVNTSL AYKPAMLSMV AVAAVCVCVA LLFKSCPEVL 960 YVFHPFRWEN LEYGSS*

Sequence ? help Back to Top

Protein Sequence Length: 977 aa Download sequence Send to blast

MEANVGDQIR HYYGLGSSSL NPVGKRSLEW DLNDWKWDGH QFVASPLNCK PSGYSSHQLL  60
PETGGSSNNS STCSDDATIG NDTREEELLR SRRAAAGGEV GDAGNLSLML GGNGVPASEM  120
QLTSWEGANG KKSKVVVGGS SSNRGVCQVE DCGADLSKAK DYHRRHKVCE MHSKASRALV  180
GNVMQRFCQQ CSRFHALPEF DEGKRSCRRR LAGHNKRRRK TNPLNVAPGT SLNDDQSNNY  240
LLLTLLKILA DLHSNRSDGA KNQDMLSHLL RSLEENTVAN GGKNITEAVC ALLSNGRQAL  300
ASSGGQHTLA MQEMPQNGSP SADVSPPPST VISIKDSPPG YSVAPSTAAG PVKLNTFDLN  360
DVYVDSADGI EDLEGFRVPA NNGNSSIGCP SWMQQDVHSS SPPQVSRNSD SGSAQSPSSS  420
SGGDQIRTDR IVFKLFGKEP CDFPLALRTQ ILDWLAHTPT DIESYIRPGC IVLTIYLRLA  480
ESVWDELCLD LSSSLSRLID VSEDSFWSTG WVYVRVQDQV AFICNGQVVL DTTSPYISSA  540
SRILSVRPIA IPMSEKASFS IKGCNLFPPN SRLLCAIEGQ YLAQENIPES LEESSSNHND  600
SDKLQVINYS CSIPAITGRG FVEVEEDNGL GRDFFPFIVA ESDLCSEIRM LESTLEPTET  660
DETSENGEPD ARSNAIDFIQ EMGWLLRRSQ LRLRFGYSNK RAEDLFHFDR FKWLMEFSLD  720
RDWCAVVKKL LDILCDGVVG SGEHDSLVAA VSDMGILHRA VRRNSRPLVE LLLRYVPEQT  780
SNNSMMKAGE LLFMPNEMGP AGLTPLHIAA GRDGAEAVLD ALTDDPNKVG IEAWQSARDS  840
TGASPEDYAR LRGHYSYIHL VQRKISKKSF TPGHVVLDIP NTLSDPKANK RETTTQKSSF  900
QISNFPMRTG SGPCKICDQK LIYRTVNTSL AYKPAMLSMV AVAAVCVCVA LLFKSCPEVL  960
YVFHPFRWEN LEYGSS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-30	139	220	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000269\|PubMed:16554053}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00633	PBM	Transfer from PK06791.1	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021664716.1	0.0	squamosa promoter-binding-like protein 1 isoform X2
Swissprot	Q9S7P5	0.0	SPL12_ARATH; Squamosa promoter-binding-like protein 12
TrEMBL	F6HZE3	0.0	F6HZE3_VITVI; Uncharacterized protein
STRING	VIT_07s0005g02260.t01	0.0	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1

Link Out ? help Back to Top
Phytozome	Kalax.0472s0020.1.p

Publications ? help Back to Top
Jung S, et al. Synteny conservation between the Prunus genome and both the present and ancestral Arabidopsis genomes. BMC Genomics, 2006. 7: p. 81 [PMID:16615871] Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Chao LM, et al. Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage. Mol Plant, 2017. 10(5): p. 735-748 [PMID:28400323]