PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0472s0005.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 493aa    MW: 53458 Da    PI: 9.9618
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0472s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.6e-0580102123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          + C++C+k F r  nL+ H r H
  Kalax.0472s0005.1.p  80 FICEICKKGFQRDQNLQLHRRGH 102
                          89*******************88 PP
2zf-C2H212.10.00058157179123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC +C+k +  +s+ k H +t+
  Kalax.0472s0005.1.p 157 WKCDKCSKKYAVQSDWKAHSKTC 179
                          58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.1E-779102No hitNo description
Gene3DG3DSA:3.30.160.607.7E-579102IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.53380102IPR007087Zinc finger, C2H2
SMARTSM003550.0580102IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
SMARTSM00355100122152IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.8E-4145178IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.1E-7152177No hitNo description
SMARTSM00355150157177IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MSTNMQRMLS ASDGGTCFPI PSHSIRGFPP TLLETDPNQN PKLDPNPVSN KKKRNLPGTP  60
DPDAEVIALS PKSLMATNRF ICEICKKGFQ RDQNLQLHRR GHNLPWKLKQ RNNKEIPKKK  120
VYICPEKTCV HHDPSRALGD LTGIKKHFSR KHGEKKWKCD KCSKKYAVQS DWKAHSKTCG  180
TREYKCDCGT LFSRKDSFIT HRAFCDALTE ENARFAAKAA INNLSFRNDT LPSDPNNAPH  240
SNNLQQLHLP AGFVISSAGY PNQDFSSISQ FDSVFRPDNF NGMSDQMFAM GCSGFFGSSF  300
MPDFGQLPTS TIASLSLSSS SIMSQTLMKP PELHRSNSDV NRTHTNMLVG TSAAGTSLYS  360
SDPKSTKSSH HSAAMSATAL LQKAAQMGSS TRSTTTAANN TFLSKNNATP DATTIPASIS  420
SSSTSSRPSN ISVNSLRPDN LRNGLTRDFL GISNGEAPAG GSSNPFSPHQ PDKFASCAVA  480
TGFSSQLTGG NH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-37153217367Zinc finger protein JACKDAW
5b3h_F2e-37153217367Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002275477.31e-141PREDICTED: zinc finger protein JACKDAW
RefseqXP_010653553.11e-141PREDICTED: zinc finger protein JACKDAW
TrEMBLF6HR111e-140F6HR11_VITVI; Uncharacterized protein
STRINGVIT_08s0040g02100.t011e-141(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03150.11e-103C2H2-like zinc finger protein