PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0470s0001.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRF
Protein Properties Length: 490aa    MW: 52823.2 Da    PI: 9.0219
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0470s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC74.31.4e-23170214145
                  WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                          d+epgrCrRtDGKkWRCs+ v  ++k+CE+H+hrgr rsrk +e+
  Kalax.0470s0001.1.p 170 DPEPGRCRRTDGKKWRCSNGVALDQKYCEKHVHRGRPRSRKLVEA 214
                          79***************************************9985 PP
2QLQ44.64.3e-16112144234
                  QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqa 34 
                          +FT aQ+ +L++Q++++Ky++++ PvP +Ll++
  Kalax.0470s0001.1.p 112 PFTTAQWKELERQAMVFKYMMHSIPVPYDLLLP 144
                          8*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009515.1E-9111147IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088806.1E-11112144IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166617.623112147IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166723.223170214IPR014977WRC domain
PfamPF088794.0E-19171213IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010114Biological Processresponse to red light
GO:0010218Biological Processresponse to far red light
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MSMDLCRPFL SGDGSDYDPG VGISGPASNM NRSCMMMMPM NMMGSSGGEI LSHNVAAEAV  60
DVRTKLMLEQ QHHQQQQQPF DMYAATCGGS VIKSPGNGGM AAAAAAPMGF FPFTTAQWKE  120
LERQAMVFKY MMHSIPVPYD LLLPFITATN NDPSGVRRDS HLLRFLKNGD PEPGRCRRTD  180
GKKWRCSNGV ALDQKYCEKH VHRGRPRSRK LVEAASSDCN NKSNKKPRPL PQTQPNAPPP  240
PPVSGSQNGA GSDLKIPRSA AVYANAALGN QPSSVPASLL PQSHPRNNAD WSQGQWNRLM  300
AQSKRGDAPE RSHYSNASLY HQQLSLNSYA QFASAHDDSQ SKREFELFLN PDLKKPLMDE  360
AWTANAASTH SGNGLVSLGL SMGHVYNVVD EMSVTEQGKQ PQMGNWLTQS GGPLGEVLRP  420
KATSSPTTAA ASDSCNNKNS PQVTSSSPSG VLQKAVASHS DSTSHSSQPK SGLQWLSQDK  480
LPSSPGQHV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53660.11e-30growth-regulating factor 7