PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0469s0025.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Dof

Protein Properties

Length: 469aa MW: 50846.1 Da PI: 5.5196

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0469s0025.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.1	4.1e-38	106	164	2	60
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 +ek ++cprC s ntkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvPvG+g+rknk+ Kalax.0469s0025.1.p 106 PEKVIPCPRCSSFNTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGKRKNKQ 164 78999****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-28	94	163	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.9E-31	108	164	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.416	110	164	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	112	148	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 469 aa Download sequence Send to blast
MSEVRDPPIK LFGADIHFPE TSPSSDDADL LIPSPSESAA DRCQITRDQC EILSPIREPV 60 KYDGPPSTSK RIGDAAGDSV NKDGALKDDQ CVETDPDSQE KVLKKPEKVI PCPRCSSFNT 120 KFCYFNNYNV NQPRHFCKNC QRYWTAGGTM RNVPVGAGKR KNKQLLLQYN QVATSSEGVA 180 QADSLVSSSH LVQPNLSLSI PLTSVDGNDE TGICESMVSM FSQNDPRTVE LGSIRAADEP 240 SSSISSISST SLNELELPNQ EASQFKSSGL YYGSTPSIPL PYYTNPQWTY PWVPVACWKQ 300 PVEPIQTVPV PMEDAPLKCT PGISFPVIPY LGCIPVFNGS ASTVPLAGCS EHPSLPCATD 360 CSYTSSSSPN LGKHLRETNV STEEKTENCL WVPKSKKIDD MDTAAKCSIL NSLGLNPGKN 420 KSIPKAGVFK AFQPKPESSK HSKTEETAPV LKVNPAALSR SQTFQENT*

Sequence ? help Back to Top

Protein Sequence Length: 469 aa Download sequence Send to blast

MSEVRDPPIK LFGADIHFPE TSPSSDDADL LIPSPSESAA DRCQITRDQC EILSPIREPV  60
KYDGPPSTSK RIGDAAGDSV NKDGALKDDQ CVETDPDSQE KVLKKPEKVI PCPRCSSFNT  120
KFCYFNNYNV NQPRHFCKNC QRYWTAGGTM RNVPVGAGKR KNKQLLLQYN QVATSSEGVA  180
QADSLVSSSH LVQPNLSLSI PLTSVDGNDE TGICESMVSM FSQNDPRTVE LGSIRAADEP  240
SSSISSISST SLNELELPNQ EASQFKSSGL YYGSTPSIPL PYYTNPQWTY PWVPVACWKQ  300
PVEPIQTVPV PMEDAPLKCT PGISFPVIPY LGCIPVFNGS ASTVPLAGCS EHPSLPCATD  360
CSYTSSSSPN LGKHLRETNV STEEKTENCL WVPKSKKIDD MDTAAKCSIL NSLGLNPGKN  420
KSIPKAGVFK AFQPKPESSK HSKTEETAPV LKVNPAALSR SQTFQENT*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	2e-57	cycling DOF factor 3

Link Out ? help Back to Top
Phytozome	Kalax.0469s0025.1.p