PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0469s0007.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 1029aa    MW: 116956 Da    PI: 8.3454
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0469s0007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.65.2e-07382425346
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rWT  Ed+ l+  vk+  + +W  Ia  +g++Rt+ qc  r+q 
  Kalax.0469s0007.1.p 382 RWTRTEDKELLLIVKEKEMSNWIDIAVSLGTNRTPFQCLARFQR 425
                          9***************************************9995 PP
2Myb_DNA-binding34.44.9e-11434477246
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            W +eEd +l  av+ +G  +W  +a+ +  +Rt+ qc +rw k
  Kalax.0469s0007.1.p 434 REWEEEEDFRLCAAVRVFGESNWQMVASVLD-KRTGTQCSNRWKK 477
                          68*****************************.***********98 PP
3Myb_DNA-binding43.38.3e-14487531247
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          grWT +Ed++ +  vk++G ++W++Ia+ ++ gRt  qc++rw + 
  Kalax.0469s0007.1.p 487 GRWTIDEDKRMKVSVKLFGAKCWSKIAQFVP-GRTQVQCRERWVNC 531
                          8******************************.***********986 PP
4Myb_DNA-binding42.31.7e-13540581346
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          +WT++Ed++l  a++++    W+++a++++  Rt++qc+ rw  
  Kalax.0469s0007.1.p 540 PWTEDEDLKLMTAITEYNYC-WSKVAACIP-PRTDNQCRRRWMV 581
                          8*****************99.*********.9**********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.448278374IPR017877Myb-like domain
SMARTSM007170.21279376IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-6282298IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-6347385IPR009057Homeodomain-like
SuperFamilySSF466899.18E-14357428IPR009057Homeodomain-like
PROSITE profilePS500908.362375427IPR017877Myb-like domain
SMARTSM007171.1E-4379429IPR001005SANT/Myb domain
PfamPF139211.3E-10383444No hitNo description
Gene3DG3DSA:1.10.10.606.1E-11386435IPR009057Homeodomain-like
SuperFamilySSF466893.46E-17412481IPR009057Homeodomain-like
PROSITE profilePS5129412.185428479IPR017930Myb domain
SMARTSM007174.6E-10432481IPR001005SANT/Myb domain
CDDcd001671.79E-8435479No hitNo description
Gene3DG3DSA:1.10.10.602.6E-14436482IPR009057Homeodomain-like
PROSITE profilePS5129419.779480536IPR017930Myb domain
SuperFamilySSF466897.95E-26483579IPR009057Homeodomain-like
SMARTSM007172.2E-10485534IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-18487537IPR009057Homeodomain-like
PfamPF002493.4E-12487531IPR001005SANT/Myb domain
CDDcd001679.71E-10488530No hitNo description
SMARTSM007178.0E-10537585IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-16538582IPR009057Homeodomain-like
PROSITE profilePS5129414.036539587IPR017930Myb domain
CDDcd001674.56E-10540582No hitNo description
PfamPF002491.5E-11540580IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1029 aa     Download sequence    Send to blast
MAAHLTTDGG GDEKKVGPEE EAFSGSENDD EFDQDMESLR RACMLAGTDL ADLNPPASTL  60
PPHSDSDSDM DDYELARRVC QRLAVSADFE HKPMSMKPLS VVPPDDSDDG EDDFATLRAV  120
QKRFSSYDQK TERSCEENCI QKSEQDSDYL ERHRPDMHEP TLLPVKGSGF PRPAQLLLDS  180
IKKNRLCQKL IHNRLVQIEA RIEESKKLKD RVKILKDFQV STRKRVGLVL SQKKDHRVQL  240
ISAPKRGEKK ASAMKFGPED NRDVAFYKDA ITKFPLALQR QRWTNEERDN LRKGIKQEFQ  300
KALLEKSVDL ISYSEGSYGI SSDIDNVMAS IKGLEITPEN IRAYLPKVNW DNFASIYHQG  360
RSGAECEARW LNWEDPLRNN TRWTRTEDKE LLLIVKEKEM SNWIDIAVSL GTNRTPFQCL  420
ARFQRSLNAQ MVKREWEEEE DFRLCAAVRV FGESNWQMVA SVLDKRTGTQ CSNRWKKSLN  480
PARVRVGRWT IDEDKRMKVS VKLFGAKCWS KIAQFVPGRT QVQCRERWVN CLDPSLNWDP  540
WTEDEDLKLM TAITEYNYCW SKVAACIPPR TDNQCRRRWM VLCPDDVYRL QAAKKIQQVA  600
LISNFVDRET ERPDLGPEDF VPPLILCPAF EPYSEEPTNK RKRKRREKRA SPMNNAEYNM  660
GCSDSQKKKR CPRRRKEAQV DNEATLGAVD VNEATEAFIC LNEYVGTVEN STIVHPGSFE  720
CNEQGKADSS LYLELEPTDT GDEGKCGRSN YLKRKKYKPR RKARAENVPV QSKAFLPAAQ  780
SESMLMNHSF SHEIPVENNT TSTQKRRTTI KQNKKKSCSI YKKNDYEFAA GTLSLQMQTP  840
DKSASIPGAI VATSKSCKRE RVKASSSLKD AVSFHRPSSC SCCLESIVCH QGAVNGTRVN  900
GELIAGKAAA CLEENDFIPL ASLGKRDKNF SQNEAEYAQE ANSRSEMNNK FCCEQPATSL  960
GKDDSLALTS FIKRKRNVCN ARIENGHNVD KGRKMEIISV EQVGAGLNED DIPLALFIKK  1020
VKRVKEKI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C6e-283815792151MYB PROTO-ONCOGENE PROTEIN
1h89_C6e-283815792151MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1639645KRKRKRR
2640645RKRKRR
3640648RKRKRREKR
4642647RKRREK
5671675PRRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028073466.10.0uncharacterized protein LOC114275671 isoform X1
TrEMBLA0A1U7YTW80.0A0A1U7YTW8_NELNU; uncharacterized protein LOC104587774 isoform X1
STRINGXP_010243797.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.11e-158myb domain protein 4r1