PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0467s0015.3.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ARF
Protein Properties Length: 581aa    MW: 64999 Da    PI: 6.4471
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0467s0015.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.51.4e-24128228198
                          EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                          f+kvlt sd++++g +++ +k+a+e+     +++++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv+a++L +gD++vF   
  Kalax.0467s0015.3.p 128 FCKVLTASDTSTHGGFSVYRKHATEClppldMSQPTPTQELIGKDLHGMEWRFKHIFRGQPRRHLLTTGWSTFVSAKRLVTGDSFVFL-- 215
                          99****************************9777777889************************************************.. PP

                          SSSEE..EEEEE- CS
                   B3  86 grsefelvvkvfr 98 
                          + +++el+v+v+r
  Kalax.0467s0015.3.p 216 RGEDGELRVGVRR 228
                          4499*******98 PP
2Auxin_resp91.41.6e-30253331182
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                          a+ha++ +++F+v+Y+Pr+  s+Fvv+v+k+++a k+ + vG Rfkm+fe++ds+er +sGt+vgv ++++ +W +SkWrsL
  Kalax.0467s0015.3.p 253 ASHAVTAQTIFQVFYKPRK--SQFVVSVNKYLEANKSGFGVGKRFKMRFEGDDSPERWFSGTIVGVDNISQ-QWADSKWRSL 331
                          689***************6..9**********************************************666.*********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.23E-36117242IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-39122240IPR015300DNA-binding pseudobarrel domain
CDDcd100171.05E-19126228No hitNo description
PfamPF023621.8E-22128228IPR003340B3 DNA binding domain
SMARTSM010198.3E-22128230IPR003340B3 DNA binding domain
PROSITE profilePS5086311.998128230IPR003340B3 DNA binding domain
PfamPF065071.3E-27253331IPR010525Auxin response factor
PfamPF023096.7E-8454505IPR033389AUX/IAA domain
SuperFamilySSF542772.55E-13464545No hitNo description
PROSITE profilePS5174526.665469550IPR000270PB1 domain
PfamPF023091.8E-6515554IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MMMMMPNRCT NLSGEGMGGD GGLYEELWKA CAGPLVDVPR ERERVYYFPQ GHLEQLDTST  60
NQEMDQRITM FKLPSKILCK VLNVYLMAEP ETDEVYAQIT LIPEPDQTEP TKPDPCLPEP  120
RRPTVHSFCK VLTASDTSTH GGFSVYRKHA TECLPPLDMS QPTPTQELIG KDLHGMEWRF  180
KHIFRGQPRR HLLTTGWSTF VSAKRLVTGD SFVFLRGEDG ELRVGVRRLA CQQSNMPSVI  240
SSHSIQLGVL ASASHAVTAQ TIFQVFYKPR KSQFVVSVNK YLEANKSGFG VGKRFKMRFE  300
GDDSPERWFS GTIVGVDNIS QQWADSKWRS LRVQWDEPAA ISRPDTVSPW EIETLTPSVP  360
SCISPVIPSK NKRLRPPGDM QVPGEARKKV DAPISCRLFG IELLNPSTST PTEKPVMQPV  420
CASVGSAEGN IPDTPSAAES EQNSELSKTF KFKQLEQANG KQSFSTSARS RTKVQMQGVP  480
VGRAVDLTTL EGYDHLIDEL EDMFEIKGEL RPRNKWEIVF TDDEGDMMLV GDDPWTEFCS  540
MVRRIFICSS QEMKKLRSGS KHSVPSIELG ETATILSSDY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-168133564356Auxin response factor 1
4ldw_A1e-168133564356Auxin response factor 1
4ldw_B1e-168133564356Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021864622.10.0auxin response factor 9-like
SwissprotQ9ZPY60.0ARFK_ARATH; Auxin response factor 11
TrEMBLA0A061GDF80.0A0A061GDF8_THECC; Auxin response factor
STRINGPOPTR_0001s10900.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46530.10.0auxin response factor 11
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]