PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0466s0003.4.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NF-YA
Protein Properties Length: 268aa    MW: 29106.5 Da    PI: 9.8615
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0466s0003.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.51.9e-3295151158
            CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                          +ep+YVNaKQy++I++RRq Rak+e ekk+ +k+rkpylheSRh+hA+rR+Rg+gGrF
  Kalax.0466s0003.4.p  95 EEPVYVNAKQYNGIMRRRQIRAKAELEKKV-IKNRKPYLHESRHQHAMRRARGCGGRF 151
                          69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.0E-3793154IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.98694154IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.6E-2896151IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006164.9E-2397119IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS00686099119IPR018362CCAAT-binding factor, conserved site
PRINTSPR006164.9E-23128151IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MNIAGNFNKV IPSGIALRPD GYSGQGNQTL TTSQSTMSEN PSESTPRELV DGSMVAASYP  60
YRDPSYGAIV APYGQQPLVY GVNQARMALP LEMEEEPVYV NAKQYNGIMR RRQIRAKAEL  120
EKKVIKNRKP YLHESRHQHA MRRARGCGGR FLNTKKLNSE TSNSTSAALD GTQHNGTLSN  180
QLILPRGLGN NLPASSSGYL YPLTEPQNSS FVPDTSMGHN IVSFGSSSSS NIGGHDRSSS  240
YQTLPGDAQA YSSMQMTGPP RRTYPIT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-2095159266NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1R3KSP24e-59A0A1R3KSP2_9ROSI; CCAAT-binding transcription factor, subunit B
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20910.14e-42nuclear factor Y, subunit A9