PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0464s0001.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

TALE

Protein Properties

Length: 357aa MW: 39605.4 Da PI: 6.4586

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0464s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	27.8	4.3e-09	127	164	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ ++ LA+++gL+ +qV++WF N R + Kalax.0464s0001.1.p 127 FEHflHPYPTDVDKHILARQTGLSRSQVSNWFINARVR 164 664459******************************88 PP
2	BELL	97.3	1.3e-31	1	58	15	72
BELL 15 lleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +leeVd+rYk+y++q+++v+ssFea+ag g+a++Y +lA+ka+SrhFrcL+d i++qi Kalax.0464s0001.1.p 1 MLEEVDRRYKHYCDQMKAVVSSFEAAAGNGAATVYSALASKAMSRHFRCLRDGIVDQI 58 9********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	2.1E-5	1	56	IPR006563	POX domain
Pfam	PF07526	6.6E-27	1	54	IPR006563	POX domain
PROSITE profile	PS50071	11.774	105	168	IPR001356	Homeobox domain
CDD	cd00086	9.64E-13	108	169	No hit	No description
SMART	SM00389	7.6E-9	108	172	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.18E-17	109	175	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.9E-28	111	175	IPR009057	Homeodomain-like
Pfam	PF05920	4.7E-18	125	164	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MLEEVDRRYK HYCDQMKAVV SSFEAAAGNG AATVYSALAS KAMSRHFRCL RDGIVDQIRA 60 TKKAMGEKDD QVALGTTRGE TPRLRLLDQT LRQQKAFQQL NMMECHPWRP QRGLPERSVS 120 VLRAWLFEHF LHPYPTDVDK HILARQTGLS RSQVSNWFIN ARVRLWKPMV EEMYMEEAKE 180 ELENPNTSHN LASNSDDNSM PATGNTHFED EKPTHDQLIR IDSDCLSSII NHKTEPPPHT 240 GPTMHHGGSA SLQLQHPFYS GPIELDFSSY SHGQNLSLAG GVSLTLGLQQ HGEAGGVSLA 300 FPSSAAGGSS MFYGGGRESI DDCQTMQYAS MMDGDQGQNL PYRNLMGAQL LHDMAG*

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MLEEVDRRYK HYCDQMKAVV SSFEAAAGNG AATVYSALAS KAMSRHFRCL RDGIVDQIRA  60
TKKAMGEKDD QVALGTTRGE TPRLRLLDQT LRQQKAFQQL NMMECHPWRP QRGLPERSVS  120
VLRAWLFEHF LHPYPTDVDK HILARQTGLS RSQVSNWFIN ARVRLWKPMV EEMYMEEAKE  180
ELENPNTSHN LASNSDDNSM PATGNTHFED EKPTHDQLIR IDSDCLSSII NHKTEPPPHT  240
GPTMHHGGSA SLQLQHPFYS GPIELDFSSY SHGQNLSLAG GVSLTLGLQQ HGEAGGVSLA  300
FPSSAAGGSS MFYGGGRESI DDCQTMQYAS MMDGDQGQNL PYRNLMGAQL LHDMAG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrm_A	9e-16	114	172	5	63	Homeobox protein Meis2
4xrm_B	9e-16	114	172	5	63	Homeobox protein Meis2
4xrs_A	9e-16	114	171	1	58	Homeobox protein Meis1
4xrs_B	9e-16	114	171	1	58	Homeobox protein Meis1
5bng_A	8e-16	114	172	1	59	Homeobox protein Meis2
5bng_B	8e-16	114	172	1	59	Homeobox protein Meis2
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269\|PubMed:12244239, ECO:0000269\|PubMed:17693535, ECO:0000269\|PubMed:22786869}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007040323.2	1e-162	PREDICTED: homeobox protein BEL1 homolog
Refseq	XP_007040324.2	1e-162	PREDICTED: homeobox protein BEL1 homolog
Swissprot	Q38897	1e-120	BEL1_ARATH; Homeobox protein BEL1 homolog
TrEMBL	A0A067GCE5	1e-161	A0A067GCE5_CITSI; Uncharacterized protein
TrEMBL	A0A067GLL1	1e-160	A0A067GLL1_CITSI; Uncharacterized protein
STRING	VIT_02s0025g00200.t01	1e-161	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41410.1	1e-101	TALE family protein

Link Out ? help Back to Top
Phytozome	Kalax.0464s0001.1.p

Publications ? help Back to Top
Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules. Development, 2016. 143(3): p. 422-6 [PMID:26700684] Lozano-Sotomayor P, et al. Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana. Plant J., 2016. 88(3): p. 437-451 [PMID:27402171]