PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0462s0007.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MYB

Protein Properties

Length: 293aa MW: 33467.3 Da PI: 5.2092

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0462s0007.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.6	5e-17	8	55	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ede+l+ ++ ++G +W++ ar g++Rt+k+c++rw+++l Kalax.0462s0007.1.p 8 KGPWSEQEDEQLLSYISKYGHAHWEAMARQAGLNRTGKSCRLRWLNHL 55 79********************************************97 PP
2	Myb_DNA-binding	45.8	1.4e-14	61	104	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T +E++++++++ ++G++ W++Ia++++ gR+++++k++w++ Kalax.0462s0007.1.p 61 RGNITLQEQLIILQLHSRWGNR-WAKIAECLP-GRSDNEIKNYWRT 104 7899****************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	21.722	3	59	IPR017930	Myb domain
SuperFamily	SSF46689	8.41E-30	5	102	IPR009057	Homeodomain-like
SMART	SM00717	9.4E-16	7	57	IPR001005	SANT/Myb domain
Pfam	PF00249	2.3E-15	8	55	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.3E-22	9	62	IPR009057	Homeodomain-like
CDD	cd00167	5.45E-11	10	55	No hit	No description
PROSITE profile	PS51294	16.494	60	110	IPR017930	Myb domain
SMART	SM00717	2.7E-13	60	108	IPR001005	SANT/Myb domain
Pfam	PF00249	2.8E-13	61	104	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.5E-20	63	109	IPR009057	Homeodomain-like
CDD	cd00167	1.60E-9	65	104	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MATGGVKKGP WSEQEDEQLL SYISKYGHAH WEAMARQAGL NRTGKSCRLR WLNHLRPGVR 60 RGNITLQEQL IILQLHSRWG NRWAKIAECL PGRSDNEIKN YWRTRVQKQA KQLRCDVNSH 120 QFTEMVQHTW MPQLSERVQT QCKSSPTITQ ELECCEPSSI SCDKLSNDSA IIHSDAAPLS 180 IPCQLSDPSS SHAYNNDSDR HVSDAADSDT AWRLSAGVDA DTCQMNVEKE TISCEDYCPW 240 SEQGLLEVDK KQELLETAAW YDHDYCYSLE NLLNDDDMMI LCQQFLFDDH RA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	1e-26	8	110	4	105	MYB PROTO-ONCOGENE PROTEIN
1h88_C	3e-26	8	110	58	159	MYB PROTO-ONCOGENE PROTEIN
1h89_C	3e-26	8	110	58	159	MYB PROTO-ONCOGENE PROTEIN
1h8a_C	2e-26	6	110	25	128	MYB TRANSFORMING PROTEIN
1mse_C	1e-26	8	110	4	105	C-Myb DNA-Binding Domain
1msf_C	1e-26	8	110	4	105	C-Myb DNA-Binding Domain

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015939423.1	3e-71	transcription factor MYB108-like
Refseq	XP_025618639.1	3e-71	transcription factor MYB108
STRING	XP_007163206.1	1e-68	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49620.1	1e-60	myb domain protein 78

Link Out ? help Back to Top
Phytozome	Kalax.0462s0007.1.p