PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0461s0033.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRAS
Protein Properties Length: 441aa    MW: 49847.9 Da    PI: 4.5176
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0461s0033.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS124.21.6e-38794402374
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                           +lL + Aea ++++++l + + + + ++a p g++++Rl +y+ +         +++ y+ l+ +++      +   a+k+f++++P+ 
  Kalax.0461s0033.1.p  79 AHLLKAHAEATEAEHTRLMEVIQTCVLDQAGPVGETTERLSFYLFKP--------QPQ-YSYLKQESQ-----PNFDVAYKAFYQLFPYG 154
                          68888999999999999999999999999999999999999996543........233.333333333.....3556789********** PP

                 GRAS  92 kfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180
                          ++ h++aN+aIlea+  +  +  i+Dfd++ G+QW++L+++La ++++   l + +++    ++ +  e t++rL++ A+++  +++ + 
  Kalax.0461s0033.1.p 155 RVPHIAANSAILEALPAHaGTFNIVDFDMGDGVQWAPLIDTLARQNKE---LSLMAIKW---DEDDDFEDTRRRLESHARSVAAKLRVQE 238
                          ***************9887999*********************87655...88999998...5799***********************9 PP

                 GRAS 181 lvak.rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvksl.....sPkvvvvveqeadhnse....sFlerflea 260
                          ++++  +++++  + r+ +    a n++++l ++   ++ +e++ +++L + k+l     +  ++++ e ead n++    ++   f + 
  Kalax.0461s0033.1.p 239 VAMEdLVSEVKRISKRCAQAPWFAFNCMVSLPHMI--KGRSEEKVRQFLTVAKDLlgdstNCGMITFGEGEADANKQtnlsNYSSFFERQ 326
                          9555256677777779999***************9..67777779*******976444448889*******9998885555677788899 PP

                 GRAS 261 leyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgy 349
                          l  + al++s+e ++++++ e+++ +E  +l+++i++    ++ e    +++ ++ r++  + G++ ++l++++ ++a+ l+r+ ++  y
  Kalax.0461s0033.1.p 327 LARHQALLESVEWTFSEQQlEAKVAIECLFLAPSITSHGWLQKWE---HMNEERNVRAAAATLGLEGLRLGQTTLTEANKLVRRGEDSSY 413
                          *****************9999999***********9987777776...6666778899****************************8889 PP

                 GRAS 350 rve..eesgslvlgWkdrpLvsvSaWr 374
                          ++   e+++++vl W++ pLv +S Wr
  Kalax.0461s0033.1.p 414 KLRlgEDENEMVLEWRGTPLVRLSTWR 440
                          98888*********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098518.62252418IPR005202Transcription factor GRAS
PfamPF035145.4E-3679440IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MEDFPPSLWS TEGSQSWDME EEEEELQQYA WNQVDGVLSM DSSFSTQNSC TVEFSACDSG  60
QVTMTNAPSE LACNELSLAH LLKAHAEATE AEHTRLMEVI QTCVLDQAGP VGETTERLSF  120
YLFKPQPQYS YLKQESQPNF DVAYKAFYQL FPYGRVPHIA ANSAILEALP AHAGTFNIVD  180
FDMGDGVQWA PLIDTLARQN KELSLMAIKW DEDDDFEDTR RRLESHARSV AAKLRVQEVA  240
MEDLVSEVKR ISKRCAQAPW FAFNCMVSLP HMIKGRSEEK VRQFLTVAKD LLGDSTNCGM  300
ITFGEGEADA NKQTNLSNYS SFFERQLARH QALLESVEWT FSEQQLEAKV AIECLFLAPS  360
ITSHGWLQKW EHMNEERNVR AAAATLGLEG LRLGQTTLTE ANKLVRRGED SSYKLRLGED  420
ENEMVLEWRG TPLVRLSTWR *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007026605.21e-118PREDICTED: nodulation-signaling pathway 2 protein
STRINGEOY071071e-117(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.17e-12GRAS family protein