PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0461s0023.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GATA
Protein Properties Length: 162aa    MW: 17678.3 Da    PI: 10.4896
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0461s0023.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA26.49.4e-091940122
                 GATA  1 CsnCgttkTplWRrgpdgnktL 22
                         C+ Cgt  TplWR+gp g+k L
  Kalax.0461s0023.1.p 19 CAMCGTARTPLWRSGPAGPKDL 40
                         9******************966 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577168.55E-81173No hitNo description
SMARTSM004015.9E-61381IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.7081336IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.106.4E-101380IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.87E-81866No hitNo description
PfamPF003202.6E-61940IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MDLSQKETAM VSDETKKRCA MCGTARTPLW RSGPAGPKDL TTDNVSWFQF LQSLCNACGI  60
KQRKRKALMC KNPDKKKQRQ PTTTNPAASP PSTSTEPPSK SKPGVEKSCA TNSRQSVKVG  120
LAAFGKDLAL LQRQRSLRRQ RSEEEEAAVL LMSLSCSYVL G*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.12e-15GATA transcription factor 15