PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0461s0009.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HSF
Protein Properties Length: 375aa    MW: 42907.4 Da    PI: 4.4458
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0461s0009.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind105.25.4e-33331232101
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k++e++e++e++ ++swse  nsf+v+d  ef+  vLpkyFkh+nf+SF+RQLn+YgF+kv+ ++          eF+++sF  g++
  Kalax.0461s0009.1.p  33 FLTKIFEMVENPETDPVVSWSEARNSFIVWDYIEFSAVVLPKYFKHNNFSSFIRQLNTYGFRKVDPDR---------YEFANESFLGGQR 113
                          9*****************************************************************99.........78*********** PP

                          XXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkk 101
                          +ll++ikr++
  Kalax.0461s0009.1.p 114 HLLRTIKRRR 123
                          ********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467859.79E-3329122IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.107.6E-3629122IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.3E-5429122IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.0E-2933122IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.6E-193356IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.6E-197183IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407296IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.6E-198496IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MEEVVKVKEE PVTEVVPEPM EGLLLQGAGP PPFLTKIFEM VENPETDPVV SWSEARNSFI  60
VWDYIEFSAV VLPKYFKHNN FSSFIRQLNT YGFRKVDPDR YEFANESFLG GQRHLLRTIK  120
RRRHVGLSSQ LQGVVGVSGL EGFEDEIGIL KRERRMLLTE VLRLKQQQLD AKEHMVGMQE  180
RLLRTEKKQQ QIASFLSRVV SNPSILEQFL EGSAKRSALV YGVENRKKQR LTASCSPDNM  240
QDVVTSALGV SEGVGFSSQY QAEELMNIES EMESLFSYGM ENDLNNEIGY LKLDTFLEED  300
AGDENWDYVS EAIWDDLPSK EVINWTKYYS LDIHSRDQVD MKVPAEDLVS PIELELGEDF  360
QDLVGQLNYL DRSH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-262812212120Heat shock factor protein 1
5d5u_B2e-262812221129Heat shock factor protein 1
5d5v_B2e-262812221129Heat shock factor protein 1
5d5v_D2e-262812221129Heat shock factor protein 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.12e-84heat shock transcription factor A2