PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0451s0052.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

GRAS

Protein Properties

Length: 669aa MW: 74729 Da PI: 5.2287

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0451s0052.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	367.2	2.2e-112	292	662	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 l+e+L +cA+av+s d + a++lL ++++++sp+gd++qRla+yf++ L+arl++s+++l++ ++ ++ + ++ l+a+kl++ +P+ Kalax.0451s0052.1.p 292 LREVLSQCAQAVASYDVRTANELLGKIRQQSSPYGDANQRLAHYFANSLEARLVGSSTHLFSLVRLRAPA----ADILKAYKLYVTSCPF 377 6789*******************************************************999999996....9*********** PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178 k+s++ aN+ + + + +++ +HiiDf+i +G+QWp+L+q L++Rp+gpp+lRiTg++ p++g +e++eetg+rL+k++++++vpfe+ Kalax.0451s0052.1.p 378 KKISNVYANRLVDKLAVKATSLHIIDFGILYGFQWPCLIQRLSQRPGGPPRLRITGIDLPQPGfrPSERVEETGDRLTKYCKKFNVPFEY 467 **********************************************************9*********************** PP GRAS 179 nvlvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267 ++ +a+++e+++le+L++ +++++Vn+ ++l +l+de+vs++++rd+vLkl+++++P++++ + + ++++ Fl+rf e+l ++sal Kalax.0451s0052.1.p 468 TP-IAQKWESIKLEDLNLGDrHDMVVVNCLYRLRNLPDETVSVTNPRDTVLKLIRKINPDIFIQAAVNGTYDAPFFLTRFRETLFHFSAL 556 .7***********9877***************************************************************** PP GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgs 357 +d +ea++p+e++er +E+e+lgr+++n++aceg++r+ r et+++W++r+++aGF+++pl+++ +k +++ +r+ + + + v+e++++ Kalax.0451s0052.1.p 557 YDIFEATMPSENQERLLYEKEVLGRDAMNIIACEGSQRIDRPETYRRWQSRIRRAGFSQLPLDQDLMKLVRSKVRREYHKDFVVDEDKQW 646 **************************************************************************888***** PP GRAS 358 lvlgWkdrpLvsvSaW 373 l++gWk+r L+++++W Kalax.0451s0052.1.p 647 LLQGWKGRILYALTVW 662 ************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	64.378	266	643	IPR005202	Transcription factor GRAS
Pfam	PF03514	7.7E-110	292	662	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 669 aa Download sequence Send to blast
MEAAALMDPP IDFGFKAAAG LPCSKQILVN GYKLGGNMTP GDSGFSVDVG EYLVDAESPP 60 YWNPGAGSGS GSSSPDGDEA EHDSNATLKF INDILMEEDW DGKKCMFQDC MGALQAAEKS 120 FSDALYGHDQ PSHAASGVDP GLAAGSTVSE PFEHSGSFSV VGIESSVSSS GTYSQAEVSF 180 SEIFEQEAWR LDGINTSTAE MASRRGIGGR QRDRDGDDDC GEEGRRSKYS ATSPEESSPA 240 VEDEEVDDRF LLCDKDGECN ALEQLIPQAS EKKVSRRNRS KKGEKKQQVV DLREVLSQCA 300 QAVASYDVRT ANELLGKIRQ QSSPYGDANQ RLAHYFANSL EARLVGSSTH LFSLVRLRAP 360 AADILKAYKL YVTSCPFKKI SNVYANRLVD KLAVKATSLH IIDFGILYGF QWPCLIQRLS 420 QRPGGPPRLR ITGIDLPQPG FRPSERVEET GDRLTKYCKK FNVPFEYTPI AQKWESIKLE 480 DLNLGDRHDM VVVNCLYRLR NLPDETVSVT NPRDTVLKLI RKINPDIFIQ AAVNGTYDAP 540 FFLTRFRETL FHFSALYDIF EATMPSENQE RLLYEKEVLG RDAMNIIACE GSQRIDRPET 600 YRRWQSRIRR AGFSQLPLDQ DLMKLVRSKV RREYHKDFVV DEDKQWLLQG WKGRILYALT 660 VWIPTSQD*

Sequence ? help Back to Top

Protein Sequence Length: 669 aa Download sequence Send to blast

MEAAALMDPP IDFGFKAAAG LPCSKQILVN GYKLGGNMTP GDSGFSVDVG EYLVDAESPP  60
YWNPGAGSGS GSSSPDGDEA EHDSNATLKF INDILMEEDW DGKKCMFQDC MGALQAAEKS  120
FSDALYGHDQ PSHAASGVDP GLAAGSTVSE PFEHSGSFSV VGIESSVSSS GTYSQAEVSF  180
SEIFEQEAWR LDGINTSTAE MASRRGIGGR QRDRDGDDDC GEEGRRSKYS ATSPEESSPA  240
VEDEEVDDRF LLCDKDGECN ALEQLIPQAS EKKVSRRNRS KKGEKKQQVV DLREVLSQCA  300
QAVASYDVRT ANELLGKIRQ QSSPYGDANQ RLAHYFANSL EARLVGSSTH LFSLVRLRAP  360
AADILKAYKL YVTSCPFKKI SNVYANRLVD KLAVKATSLH IIDFGILYGF QWPCLIQRLS  420
QRPGGPPRLR ITGIDLPQPG FRPSERVEET GDRLTKYCKK FNVPFEYTPI AQKWESIKLE  480
DLNLGDRHDM VVVNCLYRLR NLPDETVSVT NPRDTVLKLI RKINPDIFIQ AAVNGTYDAP  540
FFLTRFRETL FHFSALYDIF EATMPSENQE RLLYEKEVLG RDAMNIIACE GSQRIDRPET  600
YRRWQSRIRR AGFSQLPLDQ DLMKLVRSKV RREYHKDFVV DEDKQWLLQG WKGRILYALT  660
VWIPTSQD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-50	276	666	3	382	Protein SCARECROW
5b3h_A	2e-50	298	666	24	381	Protein SCARECROW
5b3h_D	2e-50	298	666	24	381	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023897035.1	0.0	scarecrow-like protein 30
Swissprot	Q9XE58	1e-168	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	B9T680	0.0	B9T680_RICCO; Transcription factor, putative
STRING	XP_002533749.1	0.0	(Ricinus communis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-167	SCARECROW-like 14

Link Out ? help Back to Top
Phytozome	Kalax.0451s0052.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]