PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0449s0003.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

GRAS

Protein Properties

Length: 782aa MW: 85585 Da PI: 6.4601

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0449s0003.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	417.3	1.3e-127	411	770	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 +lLl+cAeavs+++le+a+++L ++s+l++p g++ qR+aayf eA+++rl++s+ ++y++lp++ ++++++ + +a+++f+ +sP++ Kalax.0449s0003.1.p 411 LTLLLQCAEAVSADNLEEANQMLLEISQLSTPFGTSAQRVAAYFSEAMSSRLVSSCLGIYRSLPATVLPHYTHKMVSSAFQVFNGISPFV 500 579************************************************************************************* PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl 181 kfsh+taNqaI ea+e+e+rvHiiD+di+qGlQWp L++ LasRp+gpp +R+Tg+g s e+le+tg+rL++fA++lg+pfef + Kalax.0449s0003.1.p 501 KFSHFTANQAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPFVRLTGLGT----SMEALEATGKRLSDFADKLGLPFEFFP- 585 ******************************************************....***********************. PP GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271 va+++ +l+le+L+++++Ea+aV++ h+l+d ++s ++ +L+l+++l Pkvv+vveq+++h ++sFl rf+ea++yysalfdsl Kalax.0449s0003.1.p 586 VAEKIGNLDLEKLNISRREAVAVHWLQ--HSLYDVTGSDTN----TLWLLQRLAPKVVTVVEQDLSH-AGSFLGRFVEAIHYYSALFDSL 668 7*********************9..999999999999....******************.899*************** PP GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlg 361 a++ +eseer++vE++ll+rei+nv+a g +r + + +++Wre+++e+GF+ ++l +aa+qa lll +++ dgy++ e+sg+l lg Kalax.0449s0003.1.p 669 GASYDEESEERHVVEQQLLSREIRNVLAVGGPSRSGEVK-FQNWREKFQESGFRGISLAGNAATQATLLLGMFPCDGYTLVEDSGTLKLG 757 *****************************888776.********************************************** PP GRAS 362 WkdrpLvsvSaWr 374 Wkd L+++SaWr Kalax.0449s0003.1.p 758 WKDLCLLTASAWR 770 **********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	61.831	384	750	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.5E-125	411	770	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 782 aa Download sequence Send to blast
MSATTCSDPS NSAPVTDDIV NSSAANNQPH PKMLRKRTAS DLNSSSNTLY HQQHRFPRRI 60 SQDHAGNDSG VAPDRNPSFD SVVDCSGFQR PPAAAAAAIA TTTLVPNNNH STSLSVTLPM 120 TSTLTSLTQL APPPDASSSS SSLSHHHLLL PPPSALPAVC NFSGLPLFPP QQHHYHHLQR 180 PIPPAPDSSM DDSRSSTAWI DGIIKDLIHS SSASVSIPQL IHNVREIIFP CNPTLAAQLE 240 HRLRFLTESA ASRLPEMPVR KDAVAVQSPL LPPPRQQYQH HQQQHHLLLD GSAHHLPYDT 300 VIVPSQITAA HSQPSNWGAA ALPAPPPPPP HQQSCNDQNT ITNLPNPRQQ QQQSEQSDER 360 ETSSPSDPAG SVVTPSPTET APSPTAALAS YKQMKEEARQ RQRDEEGLHL LTLLLQCAEA 420 VSADNLEEAN QMLLEISQLS TPFGTSAQRV AAYFSEAMSS RLVSSCLGIY RSLPATVLPH 480 YTHKMVSSAF QVFNGISPFV KFSHFTANQA IQEAFEREDR VHIIDLDIMQ GLQWPGLFHI 540 LASRPGGPPF VRLTGLGTSM EALEATGKRL SDFADKLGLP FEFFPVAEKI GNLDLEKLNI 600 SRREAVAVHW LQHSLYDVTG SDTNTLWLLQ RLAPKVVTVV EQDLSHAGSF LGRFVEAIHY 660 YSALFDSLGA SYDEESEERH VVEQQLLSRE IRNVLAVGGP SRSGEVKFQN WREKFQESGF 720 RGISLAGNAA TQATLLLGMF PCDGYTLVED SGTLKLGWKD LCLLTASAWR PYQPNPHYYV 780 H*

Sequence ? help Back to Top

Protein Sequence Length: 782 aa Download sequence Send to blast

MSATTCSDPS NSAPVTDDIV NSSAANNQPH PKMLRKRTAS DLNSSSNTLY HQQHRFPRRI  60
SQDHAGNDSG VAPDRNPSFD SVVDCSGFQR PPAAAAAAIA TTTLVPNNNH STSLSVTLPM  120
TSTLTSLTQL APPPDASSSS SSLSHHHLLL PPPSALPAVC NFSGLPLFPP QQHHYHHLQR  180
PIPPAPDSSM DDSRSSTAWI DGIIKDLIHS SSASVSIPQL IHNVREIIFP CNPTLAAQLE  240
HRLRFLTESA ASRLPEMPVR KDAVAVQSPL LPPPRQQYQH HQQQHHLLLD GSAHHLPYDT  300
VIVPSQITAA HSQPSNWGAA ALPAPPPPPP HQQSCNDQNT ITNLPNPRQQ QQQSEQSDER  360
ETSSPSDPAG SVVTPSPTET APSPTAALAS YKQMKEEARQ RQRDEEGLHL LTLLLQCAEA  420
VSADNLEEAN QMLLEISQLS TPFGTSAQRV AAYFSEAMSS RLVSSCLGIY RSLPATVLPH  480
YTHKMVSSAF QVFNGISPFV KFSHFTANQA IQEAFEREDR VHIIDLDIMQ GLQWPGLFHI  540
LASRPGGPPF VRLTGLGTSM EALEATGKRL SDFADKLGLP FEFFPVAEKI GNLDLEKLNI  600
SRREAVAVHW LQHSLYDVTG SDTNTLWLLQ RLAPKVVTVV EQDLSHAGSF LGRFVEAIHY  660
YSALFDSLGA SYDEESEERH VVEQQLLSRE IRNVLAVGGP SRSGEVKFQN WREKFQESGF  720
RGISLAGNAA TQATLLLGMF PCDGYTLVED SGTLKLGWKD LCLLTASAWR PYQPNPHYYV  780
H*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	0.0	395	771	4	380	Protein SCARECROW
5b3h_A	0.0	395	771	3	379	Protein SCARECROW
5b3h_D	0.0	395	771	3	379	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor involved in asymmetric cell division (By similarity). Required for differentiation of endodermis and graviresponses. {ECO:0000250, ECO:0000269\|PubMed:16339910}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008463324.2	0.0	PREDICTED: protein SCARECROW 1
Swissprot	Q2Z2E9	0.0	SCR_IPONI; Protein SCARECROW
TrEMBL	A0A1S3CJ05	0.0	A0A1S3CJ05_CUCME; protein SCARECROW 1
STRING	XP_004163982.1	0.0	(Cucumis sativus)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54220.1	0.0	GRAS family protein

Link Out ? help Back to Top
Phytozome	Kalax.0449s0003.1.p