PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0448s0001.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family M-type_MADS
Protein Properties Length: 268aa    MW: 30082.6 Da    PI: 5.736
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0448s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF30.54.5e-101150342
                         --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
               SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                         i n + r  tf kRr+ ++ K +E+SvL +++++ ii+s+
  Kalax.0448s0001.1.p 11 ITNPTARRATFRKRRENLIRKLNEISVLAGTDACGIILSP 50
                         88999********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.012149IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-14161IPR002100Transcription factor, MADS-box
CDDcd002662.41E-22284No hitNo description
SuperFamilySSF554552.22E-19293IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-7323IPR002100Transcription factor, MADS-box
PfamPF003191.3E-101150IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-72338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MTRKKVQLAW ITNPTARRAT FRKRRENLIR KLNEISVLAG TDACGIILSP FEGDPPVFWP  60
PSINDILGRF FSLPELEQYK RMVSIESYMR DEISKLKETI QKERREVKEA EVSYIMNSIH  120
SHGMPIETLG GDETSELFWY FEELKKKCDL RLNQLDPNAS APQPLPESQM GMLNNTDLTD  180
PWLNRNCNNV TNNMQANYDY ATQNNNNNNN NGFGTFGGGN NIGMAGPDSS NPSYSQPPFE  240
SHHGFFSNSG MAGPSSNNAS YPQPPPP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVQLAWITNPTARRATFRKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.21e-27M-type_MADS family protein