PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0446s0009.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GATA
Protein Properties Length: 315aa    MW: 34375.4 Da    PI: 6.5219
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0446s0009.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.49.7e-19235268134
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                          Cs+C++ kTp+WR gp+g ktLCnaCG+++++ +
  Kalax.0446s0009.1.p 235 CSHCQVQKTPQWRAGPEGAKTLCNACGVRFKSGR 268
                          *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.0E-7528311IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011412.611229265IPR000679Zinc finger, GATA-type
SMARTSM004011.3E-16229283IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.14E-14230292No hitNo description
Gene3DG3DSA:3.30.50.103.5E-15232266IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.69E-13234282No hitNo description
PfamPF003201.1E-16235268IPR000679Zinc finger, GATA-type
PROSITE patternPS003440235260IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MEYCIEARAL KPSMRREIDV RPNQSLAVDE FVYETEAHGG GFVEDFLIDD LLDFPEKEVE  60
EEEKDSLSGC SAELETDENG NSTVTGEGDF LSQADDAAAG LAVPQDDLAD LEWVSRFVDD  120
TMPEFPPLYN SRKDKSGGSG RKSSGVGSLP VQLKQPRQIE PLTIPAKPRT KRRRIGRVWS  180
LNSSAASESS TASSSLSSSS IISIPLQFGF RKPLAKKQKT NSEPVQPGDS TGRRCSHCQV  240
QKTPQWRAGP EGAKTLCNAC GVRFKSGRLY PEYRPACSPT FRSDVHSNSH RKVLEMRKKK  300
EVGTGGSGLA VQSC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170174KRRRI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016539828.15e-74PREDICTED: GATA transcription factor 5
TrEMBLA0A1U8DXS61e-72A0A1U8DXS6_CAPAN; GATA transcription factor
TrEMBLA0A2G3BW351e-72A0A2G3BW35_CAPCH; GATA transcription factor
STRINGSolyc01g110310.2.13e-69(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.28e-49GATA transcription factor 5