PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0446s0007.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family DBB
Protein Properties Length: 210aa    MW: 23288.6 Da    PI: 7.1754
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0446s0007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.21.5e-07433534
             zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                         +C+ +e   ++lfC  ++  lC++C ++ H
  Kalax.0446s0007.1.p  4 ICDVCEGAAAILFCAADEAALCQSCDDKVH 33
                         8******99*****************9998 PP
2zf-B_box28.14.2e-095492438
             zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38
                          +C+ +e+ ++ ++Ce +++ lC +C +  H g    H+
  Kalax.0446s0007.1.p 54 ARCDICENAPAFFYCEVDGTSLCLQCDMIVHVGgkrtHE 92
                         69**************************99966666776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003365.1E-7147IPR000315B-box-type zinc finger
PROSITE profilePS501199.968147IPR000315B-box-type zinc finger
CDDcd000214.28E-6447No hitNo description
PfamPF006433.5E-6442IPR000315B-box-type zinc finger
SuperFamilySSF578459.61E-54990No hitNo description
SMARTSM003365.1E-105196IPR000315B-box-type zinc finger
PROSITE profilePS501199.4855196IPR000315B-box-type zinc finger
PfamPF006431.6E-75492IPR000315B-box-type zinc finger
CDDcd000213.37E-75593No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0070370Biological Processcellular heat acclimation
GO:0071483Biological Processcellular response to blue light
GO:0005634Cellular Componentnucleus
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MRSICDVCEG AAAILFCAAD EAALCQSCDD KVHMCNKLAS RHVRVRLAAP SAVARCDICE  60
NAPAFFYCEV DGTSLCLQCD MIVHVGGKRT HERYLILRQK VEFQGDKPGL LEDPASQPLE  120
TGESNEGPRN STRDNQQNHV SSPVPIIDSN GDSHVKRDTK MIDLNMKPQR IHKQASNNQV  180
TMFSLLFFHT SACSVKFSYL LLKLWPHQP*
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015889651.11e-97B-box zinc finger protein 18-like isoform X1
SwissprotC0SVM56e-72BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A1Q3C7349e-95A0A1Q3C734_CEPFO; Zf-B_box domain-containing protein
STRINGVIT_04s0023g03030.t017e-95(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.12e-74DBB family protein