PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0445s0025.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

WRKY

Protein Properties

Length: 326aa MW: 35668.8 Da PI: 8.023

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0445s0025.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	104.6	5.2e-33	172	229	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCt+++C vkk+vers +dp++v++tYeg+Hnh+ Kalax.0445s0025.1.p 172 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCFVKKRVERSFQDPSTVITTYEGQHNHH 229 8********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.0E-34	156	231	IPR003657	WRKY domain
SuperFamily	SSF118290	3.14E-29	163	231	IPR003657	WRKY domain
PROSITE profile	PS50811	32.168	166	231	IPR003657	WRKY domain
SMART	SM00774	2.5E-38	171	230	IPR003657	WRKY domain
Pfam	PF03106	2.7E-25	172	229	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MSQPNRNPYD PYPYDPFFSS LEANPNASFF SSPQEDPNSY NTNLTGHCNS YITSFNDFVH 60 GGGSVVSSSS MSTVDYVYSN NNGVAVAVAG DHSCNGSNKL PMRHSLSLSS SSAEVVGEEY 120 SGKSMVDDID HHNGDDDQSK KVRNDKQKKK GAKRAKEPRF AFVTKSEIDQ LEDGYRWRKY 180 GQKAVKNSPY PRSYYRCTTQ KCFVKKRVER SFQDPSTVIT TYEGQHNHHS PAALRGNAAA 240 MLSANAALFG GSSSSLSPGA LSSFPHHPLF TTFNNGQNAA PPLYNYNSYQ NPSNNTSSSH 300 SIVPDFGSLQ DLVNHPSSGK RESEP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	5e-29	164	232	10	78	Probable WRKY transcription factor 4
2lex_A	5e-29	164	232	10	78	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	Q8VWJ2	6e-48	WRK28_ARATH; WRKY transcription factor 28
TrEMBL	A0A2P5D830	9e-60	A0A2P5D830_PARAD; WRKY domain containing protein
STRING	XP_008447132.1	2e-58	(Cucumis melo)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29860.1	7e-45	WRKY DNA-binding protein 71

Link Out ? help Back to Top
Phytozome	Kalax.0445s0025.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kim SH, et al. Characterization of a Novel DWD protein that participates in heat stress response in Arabidopsis. Mol. Cells, 2014. 37(11): p. 833-40 [PMID:25358503] Zhao L, et al. KLU suppresses megasporocyte cell fate through SWR1-mediated activation of WRKY28 expression in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2018. 115(3): p. E526-E535 [PMID:29288215]