PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0445s0008.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | FAR1 | ||||||||
Protein Properties | Length: 819aa MW: 93476 Da PI: 6.6522 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 82.6 | 6.8e-26 | 93 | 195 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdgkwev 78 +fY+eYA+ GF++ +++s++sk+++e+++++f Cs++g+++e +k+ +++ +r+ +t+Cka+++vk++ dgkw++ Kalax.0445s0008.3.p 93 SFYQEYARANGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSlnkprarqvkqePDNTAGRRSCAKTDCKASMHVKRRPDGKWVI 182 5*******************************************9999999988776544444458999********************* PP FAR1 79 tkleleHnHelap 91 +++++eHnHel+p Kalax.0445s0008.3.p 183 HRFVKEHNHELQP 195 ***********86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 8.9E-24 | 93 | 195 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 9.7E-27 | 293 | 384 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.087 | 546 | 582 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 2.2E-5 | 554 | 579 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 2.4E-7 | 557 | 584 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 819 aa Download sequence Send to blast |
MDIDLRLPTG ETDREEEEDA NGFESILDGD IKLSNGDGEL GNLGIVGGSD NNIEYEHEGD 60 MNSHEHDMVD YKEDSNLEPI SGMEFESHGE AYSFYQEYAR ANGFNTAIQN SRRSKTSREF 120 IDAKFACSRY GTKREYDKSL NKPRARQVKQ EPDNTAGRRS CAKTDCKASM HVKRRPDGKW 180 VIHRFVKEHN HELQPAQAVS EQTRKMYAAM ARQFAEYKNL SGFKNDSKNP YDKSRGSSIE 240 AGDLRCLLDY CTQMQALNSN FFYSIDLGDD QRLRSLLWVD AKSRHDYTYF NDIVSFDTTY 300 VRSKYRFPLA LFVGVNQHYQ FVLLGCALMF EESPPTFNWI MQAWLRAMGG QAPKVIITDQ 360 DRSLKQVVSD VFPNAAHCFC LWNVLGKVSE NLSHVMKHHE NFMQKFEKCI YRSGTVDEFD 420 RRWGKIVERF ELKEDGFFQS LYEDQKHWVP LYMRDLVLAG MSTPQRSDSD RYDEEARADS 480 DPWNKLPITK SPSPLEKHMS VAYTHAVFKK GQVELLGAIA CHPKPERQEG AEMVFRVQDV 540 EKKQEFAVAW NELKAEISCV CRLFEYKGFL CRHAMIVLQI CGQSQIPSHY ILKRWAKDAK 600 MRPLMPEAPH QAQSRVHRYD DLCQRAMRLG EEAALSQESY EIAFRAIDEA LSNCAAVNNN 660 SGRSSVEAGM SSASHGLRVD EENQSLNKMS KKKNSIKKRK VTPEPDDMTV EAQNLQQMDK 720 IGVSVTLDSI YGAQHNVQGM VQLNLMGPTR DNFYSNPQGL GQLNSIAPAH DGYYVPPPSM 780 HNLAGQMDFF RTPAGFYGIR DESSIRATQI HGDHTRHA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. When associated with PHYA, protects it from being recognized and degraded by the COP1/SPA complex. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:12753585, ECO:0000269|PubMed:17012604, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:18715961, ECO:0000269|PubMed:22634759}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. Up-regulated by white light. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:22634759}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002268503.1 | 0.0 | PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3 | ||||
Refseq | XP_010648199.1 | 0.0 | PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3 | ||||
Refseq | XP_010648200.1 | 0.0 | PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3 | ||||
Swissprot | Q9LIE5 | 0.0 | FHY3_ARATH; Protein FAR-RED ELONGATED HYPOCOTYL 3 | ||||
TrEMBL | A0A438J3J5 | 0.0 | A0A438J3J5_VITVI; Protein FAR-RED elongated hypocotyl 3 | ||||
TrEMBL | F6HTM8 | 0.0 | F6HTM8_VITVI; Uncharacterized protein | ||||
STRING | VIT_03s0017g01780.t01 | 0.0 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22170.2 | 0.0 | far-red elongated hypocotyls 3 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0445s0008.3.p |