PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0445s0008.2.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

FAR1

Protein Properties

Length: 846aa MW: 96696.6 Da PI: 6.7535

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0445s0008.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	82.5	7.1e-26	93	195	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdgkwev 78 +fY+eYA+ GF++ +++s++sk+++e+++++f Cs++g+++e +k+ +++ +r+ +t+Cka+++vk++ dgkw++ Kalax.0445s0008.2.p 93 SFYQEYARANGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSlnkprarqvkqePDNTAGRRSCAKTDCKASMHVKRRPDGKWVI 182 5*****************************************9999999988776544444458999***************** PP FAR1 79 tkleleHnHelap 91 +++++eHnHel+p Kalax.0445s0008.2.p 183 HRFVKEHNHELQP 195 *********86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.3E-24	93	195	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.0E-26	293	384	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.087	573	609	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.3E-5	581	606	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.4E-7	584	611	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 846 aa Download sequence Send to blast
MDIDLRLPTG ETDREEEEDA NGFESILDGD IKLSNGDGEL GNLGIVGGSD NNIEYEHEGD 60 MNSHEHDMVD YKEDSNLEPI SGMEFESHGE AYSFYQEYAR ANGFNTAIQN SRRSKTSREF 120 IDAKFACSRY GTKREYDKSL NKPRARQVKQ EPDNTAGRRS CAKTDCKASM HVKRRPDGKW 180 VIHRFVKEHN HELQPAQAVS EQTRKMYAAM ARQFAEYKNL SGFKNDSKNP YDKSRGSSIE 240 AGDLRCLLDY CTQMQALNSN FFYSIDLGDD QRLRSLLWVD AKSRHDYTYF NDIVSFDTTY 300 VRSKYRFPLA LFVGVNQHYQ FVLLGCALMF EESPPTFNWI MQAWLRAMGG QAPKVIITDQ 360 DRSLKQVVSD VFPNAAHCFC LWNVLGKVSE NLSHVMKHHE NFMQKFEKCI YRSGTVDEFD 420 RRWGKIVERF ELKEDGFFQS LYEDQKHWVP LYMRDLVLAG MSTPQRSDSV NSSFDKYLHK 480 KTSVQDFIKQ HEAFLQDRYD EEARADSDPW NKLPITKSPS PLEKHMSVAY THAVFKKGQV 540 ELLGAIACHP KPERQEGAEM VFRVQDVEKK QEFAVAWNEL KAEISCVCRL FEYKGFLCRH 600 AMIVLQICGQ SQIPSHYILK RWAKDAKMRP LMPEAPHQAQ SRVHRYDDLC QRAMRLGEEA 660 ALSQESYEIA FRAIDEALSN CAAVNNNSGR SSVEAGMSSA SHGLRVDEEN QSLNKMSKKK 720 NSIKKRKVTP EPDDMTVEAQ NLQQMDKIGV SVTLDSIYGA QHNVQGMVQL NLMGPTRDNF 780 YSNPQGLGQL NSIAPAHDGY YVPPPSMHNL AGQMDFFRTP AGFYGIRDES SIRATQIHGD 840 HTRHA*

Sequence ? help Back to Top

Protein Sequence Length: 846 aa Download sequence Send to blast

MDIDLRLPTG ETDREEEEDA NGFESILDGD IKLSNGDGEL GNLGIVGGSD NNIEYEHEGD  60
MNSHEHDMVD YKEDSNLEPI SGMEFESHGE AYSFYQEYAR ANGFNTAIQN SRRSKTSREF  120
IDAKFACSRY GTKREYDKSL NKPRARQVKQ EPDNTAGRRS CAKTDCKASM HVKRRPDGKW  180
VIHRFVKEHN HELQPAQAVS EQTRKMYAAM ARQFAEYKNL SGFKNDSKNP YDKSRGSSIE  240
AGDLRCLLDY CTQMQALNSN FFYSIDLGDD QRLRSLLWVD AKSRHDYTYF NDIVSFDTTY  300
VRSKYRFPLA LFVGVNQHYQ FVLLGCALMF EESPPTFNWI MQAWLRAMGG QAPKVIITDQ  360
DRSLKQVVSD VFPNAAHCFC LWNVLGKVSE NLSHVMKHHE NFMQKFEKCI YRSGTVDEFD  420
RRWGKIVERF ELKEDGFFQS LYEDQKHWVP LYMRDLVLAG MSTPQRSDSV NSSFDKYLHK  480
KTSVQDFIKQ HEAFLQDRYD EEARADSDPW NKLPITKSPS PLEKHMSVAY THAVFKKGQV  540
ELLGAIACHP KPERQEGAEM VFRVQDVEKK QEFAVAWNEL KAEISCVCRL FEYKGFLCRH  600
AMIVLQICGQ SQIPSHYILK RWAKDAKMRP LMPEAPHQAQ SRVHRYDDLC QRAMRLGEEA  660
ALSQESYEIA FRAIDEALSN CAAVNNNSGR SSVEAGMSSA SHGLRVDEEN QSLNKMSKKK  720
NSIKKRKVTP EPDDMTVEAQ NLQQMDKIGV SVTLDSIYGA QHNVQGMVQL NLMGPTRDNF  780
YSNPQGLGQL NSIAPAHDGY YVPPPSMHNL AGQMDFFRTP AGFYGIRDES SIRATQIHGD  840
HTRHA*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. When associated with PHYA, protects it from being recognized and degraded by the COP1/SPA complex. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:12753585, ECO:0000269\|PubMed:17012604, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:18715961, ECO:0000269\|PubMed:22634759}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. Up-regulated by white light. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:22634759}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008229656.1	0.0	PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3
Swissprot	Q9LIE5	0.0	FHY3_ARATH; Protein FAR-RED ELONGATED HYPOCOTYL 3
TrEMBL	A0A251Q297	0.0	A0A251Q297_PRUPE; Uncharacterized protein
TrEMBL	M5WR23	0.0	M5WR23_PRUPE; Uncharacterized protein
STRING	XP_008229656.1	0.0	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	0.0	far-red elongated hypocotyls 3

Link Out ? help Back to Top
Phytozome	Kalax.0445s0008.2.p

Publications ? help Back to Top
Chang N,Gao Y,Zhao L,Liu X,Gao H Arabidopsis FHY3/CPD45 regulates far-red light signaling and chloroplast division in parallel. Sci Rep, 2015. 5: p. 9612 [PMID:25872642] Wang C, et al. SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes. J Genet Genomics, 2015. 42(4): p. 161-8 [PMID:25953354] Wang W, et al. A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis. J Integr Plant Biol, 2016. 58(1): p. 91-103 [PMID:25989254] Ma L, et al. Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1. Mol Plant, 2016. 9(4): p. 541-57 [PMID:26714049] Siddiqui H,Khan S,Rhodes BM,Devlin PF FHY3 and FAR1 Act Downstream of Light Stable Phytochromes. Front Plant Sci, 2016. 7: p. 175 [PMID:26941752] Li D, et al. FAR-RED ELONGATED HYPOCOTYL3 activates SEPALLATA2 but inhibits CLAVATA3 to regulate meristem determinacy and maintenance in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(33): p. 9375-80 [PMID:27469166] Liu L,Li B,Liu X FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis. Plant Signal Behav, 2016. 11(10): p. e1238545 [PMID:27660915] Ma L,Xue N,Fu X,Zhang H,Li G Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar. New Phytol., 2017. 213(4): p. 1682-1696 [PMID:27859295] Liu Y, et al. Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1. Plant Cell, 2017. 29(9): p. 2269-2284 [PMID:28842534] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]