PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0444s0006.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family Dof
Protein Properties Length: 392aa    MW: 43237.1 Da    PI: 7.4835
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0444s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof126.11.1e-3976136262
               zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                          +e+alkcprCdstntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+ s
  Kalax.0444s0006.1.p  76 QEEALKCPRCDSTNTKFCYYNNYSLTQPRYFCKSCRRYWTNGGTLRNVPVGGGCRKNKRPS 136
                          6899******************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027011.7E-3378134IPR003851Zinc finger, Dof-type
ProDomPD0074781.0E-2680129IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.51680134IPR003851Zinc finger, Dof-type
PROSITE patternPS01361082118IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MPSQLSLYKC HPITPHFLIL HISITLASST FISSTVLKTQ MMELSSAQHQ EMAAESLENM  60
LICTKAQQER KPRPQQEEAL KCPRCDSTNT KFCYYNNYSL TQPRYFCKSC RRYWTNGGTL  120
RNVPVGGGCR KNKRPSSKRS ANSSSDTHQQ HHHQPHHLLN SSSSDAQNPF SAFSSQMTSG  180
YDEYHHPGNN DLSLVFARLQ KQVSGYDDAQ EHNLSLLGNY TSNHFGNIMG LNSSVSSGCH  240
GFLDGLKTNL LEQTHLQTNN VSNFLYNGFN GSNNNNTSIS NITDQMMIPY EDLSISSCFG  300
TKPAAAAVLK QENQVSDSTS RSSQLLWGAA AAAGFPWHQI NTQSSIGGHD DVIINNNVVD  360
HSVDLVRDNI NVFAAAAAPV WHHGLINSPL M*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60200.13e-32TARGET OF MONOPTEROS 6