PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0444s0003.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | C3H | ||||||||
Protein Properties | Length: 447aa MW: 48751.7 Da PI: 8.5476 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 33.4 | 7.5e-11 | 108 | 132 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++ t tCk+G++CkF H+ Kalax.0444s0003.1.p 108 GEKDCTHYMLTRTCKFGETCKFDHP 132 7889********************8 PP | |||||||
2 | zf-CCCH | 29 | 1.8e-09 | 159 | 184 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C++f++t Ck+G CkF+H++ Kalax.0444s0003.1.p 159 GEPDCPYFLKTQRCKFGLMCKFNHPK 184 6899********************96 PP | |||||||
3 | zf-CCCH | 38 | 2.8e-12 | 204 | 229 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C f+++tG+Ck+G++C+F+H++ Kalax.0444s0003.1.p 204 FEPICAFYLKTGICKFGATCRFHHPK 229 689*********************96 PP | |||||||
4 | zf-CCCH | 31.5 | 2.9e-10 | 284 | 305 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+f+++tG Cky +C+++H+ Kalax.0444s0003.1.p 284 DCPFYLKTGSCKYSVTCRYNHP 305 7********************9 PP | |||||||
5 | zf-CCCH | 41.3 | 2.6e-13 | 354 | 378 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ +C+++++tG Ck+G+rCkF+H+ Kalax.0444s0003.1.p 354 GQTECDYYMKTGVCKFGERCKFHHP 378 6789********************9 PP | |||||||
6 | zf-CCCH | 35.4 | 1.8e-11 | 408 | 429 | 6 | 27 |
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C+++++t tCk+G++CkF H+p Kalax.0444s0003.1.p 408 CPYYMKTSTCKFGATCKFDHPP 429 ********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.0031 | 106 | 133 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.225 | 106 | 134 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.49E-5 | 107 | 133 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.2E-8 | 108 | 132 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.4E-5 | 157 | 184 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.864 | 157 | 185 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.1E-7 | 159 | 184 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.6E-4 | 163 | 185 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.4E-5 | 202 | 229 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.53 | 202 | 230 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.0E-9 | 204 | 229 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.71E-6 | 207 | 230 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.3E-5 | 207 | 228 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.1E-4 | 279 | 306 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.746 | 279 | 307 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.0E-8 | 284 | 305 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.27E-7 | 351 | 380 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.878 | 352 | 380 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.3E-7 | 352 | 379 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.6E-11 | 354 | 378 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.1E-6 | 358 | 378 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.3E-5 | 402 | 429 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.469 | 402 | 430 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.45E-5 | 406 | 429 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.9E-4 | 408 | 427 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.1E-9 | 408 | 429 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 447 aa Download sequence Send to blast |
MANQLLRFNT SGSGGALPLT DSDSSGDTSA GPAAVSALGA PGFWSPGPVA PAYQFPGLKR 60 SSQVLYHHNI VSTHNPIGQN DWLSMSYLAK RPRIEGSSIL PIYPQRPGEK DCTHYMLTRT 120 CKFGETCKFD HPIWVPEGGI PDWKEVPPVA TECLPERSGE PDCPYFLKTQ RCKFGLMCKF 180 NHPKEKLVYL NDKGESGALP ERPFEPICAF YLKTGICKFG ATCRFHHPKD IQRSVLEQGS 240 LTAELKSFSA KIQGTTGDVK PNVILTPALA HNAKGLPVRP GELDCPFYLK TGSCKYSVTC 300 RYNHPDRTGQ ALLMSAVDNL SNGNPAVSAL QSFDPVFVTS LLRSATIVYP QRPGQTECDY 360 YMKTGVCKFG ERCKFHHPVD RSAPSTKAQE TVKLTPAGYP RREGALTCPY YMKTSTCKFG 420 ATCKFDHPPP AEVLAMAAAQ ANSNGN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012072857.1 | 0.0 | zinc finger CCCH domain-containing protein 37 isoform X1 | ||||
Swissprot | Q941Q3 | 1e-168 | C3H37_ARATH; Zinc finger CCCH domain-containing protein 37 | ||||
TrEMBL | A0A067KR25 | 0.0 | A0A067KR25_JATCU; Uncharacterized protein | ||||
STRING | XP_010260864.1 | 0.0 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 1e-170 | floral homeotic protein (HUA1) |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0444s0003.1.p |