PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0443s0006.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 339aa    MW: 37603 Da    PI: 7.369
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0443s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.25.9e-161462148
                         TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                         +g+W++eEd++l++++ ++G+g +W + + + g++R++k+c++rw++yl
  Kalax.0443s0006.1.p 14 KGPWSPEEDLKLKEYIDKHGTGgNWISLPLKAGLRRCGKSCRLRWLNYL 62
                         79*********************************************97 PP
2Myb_DNA-binding33.31.1e-1069111246
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          g ++  Ed ++  +    G++ W+ Ia+ ++ gRt++++k++w++
  Kalax.0443s0006.1.p  69 GEFSDHEDRIICTLYYNIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                          789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.73966IPR017930Myb domain
SuperFamilySSF466893.06E-2611109IPR009057Homeodomain-like
SMARTSM007171.9E-111364IPR001005SANT/Myb domain
PfamPF002494.2E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-221569IPR009057Homeodomain-like
CDDcd001678.90E-91662No hitNo description
PROSITE profilePS5129414.35467117IPR017930Myb domain
SMARTSM007175.2E-1067115IPR001005SANT/Myb domain
PfamPF002497.7E-969111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-2270118IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDLKLKEYID KHGTGGNWIS LPLKAGLRRC GKSCRLRWLN  60
YLRPNIKHGE FSDHEDRIIC TLYYNIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLVAA  120
NVAPLPLSSL SSSPNSELMH HPHLQYLPSV PTAALCTSAC YFKDPSARLL LPAAAVGCFT  180
SSSSDNDLKY GSGDQMFHHH HADNFVAGTV DLQNYPQLNN NKDYNNSFAM LGGTTDGSCT  240
SSDGSNSNIN TKYHISHELY QIGFHDHGGV GNKLVVQDDS NSYNNDCQHP GYYYDSIEEL  300
KQLIISSSST SATSNVNFDT CCLFDESKTR QAERVMHL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-26141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004304464.11e-84PREDICTED: transcription factor RAX2
TrEMBLM5VQA22e-82M5VQA2_PRUPE; Uncharacterized protein
STRINGXP_004304464.15e-84(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.15e-71myb domain protein 36