PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0439s0033.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Dof

Protein Properties

Length: 206aa MW: 22204.5 Da PI: 8.4739

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0439s0033.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.5	6.1e-38	12	71	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++l+cprCds+ntkfCyynny+lsqPr++Ck+C+ryWtkGG+lrn+PvGg++rk k+s Kalax.0439s0033.1.p 12 HEILNCPRCDSSNTKFCYYNNYNLSQPRHYCKNCKRYWTKGGTLRNIPVGGASRKITKRS 71 6789***************************************************87665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-25	8	69	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	9.1E-33	14	68	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.164	15	69	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	17	53	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
MQDPHFSQFP EHEILNCPRC DSSNTKFCYY NNYNLSQPRH YCKNCKRYWT KGGTLRNIPV 60 GGASRKITKR SSSATTTAFL SSSSPSNSKR ATRTAPATDQ PVPVTSSAPP GLSSQQQQFV 120 GSSASSAAHL MDSTYPRMGV SGFEQMGVAG DHQTGVSVRL ADPKVESDEM RFGGLESGDM 180 NSWSGSINEW PDLAIYTSPG GSGFQ*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ857254	4e-35	DQ857254.1 Glycine max Dof4 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017249745.1	6e-44	PREDICTED: dof zinc finger protein DOF3.1-like
TrEMBL	A0A164XAQ9	1e-42	A0A164XAQ9_DAUCS; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	6e-35	DOF zinc finger protein 1

Link Out ? help Back to Top
Phytozome	Kalax.0439s0033.1.p