PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0439s0028.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRAS
Protein Properties Length: 540aa    MW: 59551.2 Da    PI: 5.9303
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0439s0028.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2261.9e-691585332374
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                          ++lL  cA a+++g+++++q+lL  l+el s +gd+++Rla   ++AL +++  + +++++a +  +++        ++l  f+e+sP++
  Kalax.0439s0028.1.p 158 EQLLNPCAAAIAAGNAARVQHLLIVLRELGSATGDANHRLALLGLRALTHHICPTPNTTVSAYTFASAE---PRFFQKSLLKFYELSPWF 244
                          689**************************************************9555555555555544...5555566666******** PP

                 GRAS  92 kfshltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg.........skeeleetgerLak 167
                           f + +aN  Il+ ++++    + +Hi+D+++s+G+QWp+Ll+aL+++p ++pp +RiT++++++ +              ++    L +
  Kalax.0439s0028.1.p 245 IFPNTIANFSILQVLAEAknysRNLHILDIGVSHGVQWPTLLEALSKQPgGPPPLVRITVMAPATDEaeidqtpfaVGPPGHRFSASLLS 334
                          ************9988876666889************************55666********988778888766666666778888899* PP

                 GRAS 168 fAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerf 257
                          fA++l++++++n++  + l++l+ + ++ ++ E+l+V+ +++lh+l    ++ ++ r++vLkl+++l+Pk v+++e++ad+ +++F ++ 
  Kalax.0439s0028.1.p 335 FAKTLNINLRINFIENHPLQNLDAQVIDGSELENLIVSAQFRLHSLS---HKAPDDRTRVLKLIRGLNPKAVILSENNADC-GGDFPTGQ 420
                          *************9999*****************************8...77777789***********************.789***** PP

                 GRAS 258 lealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.s 346
                          ++ +e++++++ds+++ +    + r   Er++++ e+  ++  +  +    +e +++W er++eaGF    l+e++++ a+ llrk++ +
  Kalax.0439s0028.1.p 421 ARRVEFMWKFLDSTSTAF----KGRECEERQVVEGEAGRALVSRRWM----NEGMGRWCERMREAGFAGEGLGEEVVDAARVLLRKYDgN 502
                          **************9987....5555555555555566666666665....8************************************99 PP

                 GRAS 347 dgyrveee...sgslvlgWkdrpLvsvSaWr 374
                          +++rv e+    g++ + Wk+ p+ ++S W+
  Kalax.0439s0028.1.p 503 WEMRVGEDdggGGCVGIWWKGLPVSFCSLWK 533
                          99****9955445666**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098535.738131509IPR005202Transcription factor GRAS
PfamPF035146.4E-67158533IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042446Biological Processhormone biosynthetic process
GO:2000032Biological Processregulation of secondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MDDLDSTNIS DHLLDWFGGH FSIDPPFSWG NDDDPYNIGD IDSLNEYLSW DPMVYEEDQQ  60
MMMQTSSNSI YNTITTTTDS AFLDDVILPD FSPSQAFEPT RKRKSADDPA PKPAQARKGD  120
GRNRSLVAKK QTGGKKKPSR SHGSNSSCGN GKDGRWAEQL LNPCAAAIAA GNAARVQHLL  180
IVLRELGSAT GDANHRLALL GLRALTHHIC PTPNTTVSAY TFASAEPRFF QKSLLKFYEL  240
SPWFIFPNTI ANFSILQVLA EAKNYSRNLH ILDIGVSHGV QWPTLLEALS KQPGGPPPLV  300
RITVMAPATD EAEIDQTPFA VGPPGHRFSA SLLSFAKTLN INLRINFIEN HPLQNLDAQV  360
IDGSELENLI VSAQFRLHSL SHKAPDDRTR VLKLIRGLNP KAVILSENNA DCGGDFPTGQ  420
ARRVEFMWKF LDSTSTAFKG RECEERQVVE GEAGRALVSR RWMNEGMGRW CERMREAGFA  480
GEGLGEEVVD AARVLLRKYD GNWEMRVGED DGGGGCVGIW WKGLPVSFCS LWKLAPVID*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B4e-3415353383473Protein SHORT-ROOT
5b3h_B2e-3415353329419Protein SHORT-ROOT
5b3h_E2e-3415353329419Protein SHORT-ROOT
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199104TRKRKS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking. May be a target of DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK) (PubMed:15961669). Is essential for Nod factor-elicited expression of ERN1 (PubMed:23077241). {ECO:0000269|PubMed:15961669, ECO:0000269|PubMed:23077241}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced after treatment with Sinorhizobium meliloti. {ECO:0000269|PubMed:15961669}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002273108.10.0PREDICTED: nodulation-signaling pathway 1 protein
SwissprotQ4VYC80.0NSP1_MEDTR; Nodulation-signaling pathway 1 protein
TrEMBLF6HXW00.0F6HXW0_VITVI; Uncharacterized protein
STRINGVIT_09s0002g01190.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.11e-131GRAS family protein
Publications ? help Back to Top
  1. Cerri MR, et al.
    Medicago truncatula ERN transcription factors: regulatory interplay with NSP1/NSP2 GRAS factors and expression dynamics throughout rhizobial infection.
    Plant Physiol., 2012. 160(4): p. 2155-72
    [PMID:23077241]
  2. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]