PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0439s0020.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 357aa    MW: 38844.6 Da    PI: 7.0554
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0439s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.24e-181461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg W++eEde+lv++++ +G g+W+++++  g+ R++k+c++rw +yl
  Kalax.0439s0020.1.p 14 RGLWSPEEDEKLVNYITTYGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61
                         788*******************************************97 PP
2Myb_DNA-binding48.81.7e-1567109145
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          rg+++t+E  l++d+++ lG++ W+ Ia++++ gRt++++k++w+
  Kalax.0439s0020.1.p  67 RGSFSTQEAALIIDLHAVLGNR-WAQIAKHLP-GRTDNEVKNFWN 109
                          899*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-26664IPR009057Homeodomain-like
PROSITE profilePS5129424.341965IPR017930Myb domain
SuperFamilySSF466898.99E-2911108IPR009057Homeodomain-like
SMARTSM007173.4E-131363IPR001005SANT/Myb domain
PfamPF002491.4E-151461IPR001005SANT/Myb domain
CDDcd001678.06E-121761No hitNo description
Gene3DG3DSA:1.10.10.602.5E-2465116IPR009057Homeodomain-like
PROSITE profilePS5129419.46566116IPR017930Myb domain
SMARTSM007171.9E-1466114IPR001005SANT/Myb domain
PfamPF002491.4E-1367110IPR001005SANT/Myb domain
CDDcd001672.10E-1069109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0009901Biological Processanther dehiscence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MGHHSCCNKQ KVKRGLWSPE EDEKLVNYIT TYGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGSF STQEAALIID LHAVLGNRWA QIAKHLPGRT DNEVKNFWNS SIKKKLLSSS  120
PSAQSNFYIN PAAAPSTNTF PAYGLQNNCN SRMMINSNNY VSTFENELLQ GTPFSLGDDN  180
LIALASSSPK NHTHTVGSEV YVPQISPGFK IFDLVVPDDH GAGFYQPVLN YPYECEAGIN  240
TTTAWPSLMG PNSNSGIVNQ STAPLLVPTD DHRHLGLKND LIQMITCDNS SMIISSDIFD  300
DLQLAGAAAC SKLDAGFPQG RQDHGEAVIS SSSSSSSPIS SAQLAVSLCE KTCQTW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-31141167108B-MYB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027908408.11e-80transcription factor MYB26
TrEMBLA0A4D6MLM22e-79A0A4D6MLM2_VIGUN; Myb proto-oncogene protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.29e-74myb domain protein 26