PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0438s0032.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

G2-like

Protein Properties

Length: 289aa MW: 31448.2 Da PI: 6.5117

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0438s0032.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.2	3.7e-33	16	70	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+vk Lt++hvkSHLQkYRl Kalax.0438s0032.1.p 16 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRAMGVKELTIYHVKSHLQKYRL 70 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.882	13	73	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.4E-32	14	71	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.61E-17	14	70	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.9E-25	16	71	IPR006447	Myb domain, plants
Pfam	PF00249	1.1E-8	18	69	IPR001005	SANT/Myb domain
Pfam	PF14379	1.5E-23	102	148	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MDPLGGGNNS PSVSSKQRLR WTHELHERFV DAVAQLGGPD RATPKGVLRA MGVKELTIYH 60 VKSHLQKYRL AKYLPDSSSD GNKVDMKESG DPHSVLEDSS GMQITEALKL QMEVQKRLHE 120 QLEVQRQLQL RIEAQGKYLK KIIEEQQRLS GVLAGSSASD HASGALDCDK IDPPTPASTS 180 ELPLQEKSPK DRTVKSFSLD ESLSSPLTPD SGCNINSPLS SPCNERSAKK QRVNMDAPSA 240 MPGMGISHIL ESSISSSYQQ PGVSSAHEQF DLPSGSSFCT DNTLPEYH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-22	16	73	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-22	16	73	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-22	16	73	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-22	16	73	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-22	16	73	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-22	16	73	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-22	16	73	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-22	16	73	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-22	16	73	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-22	16	73	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-22	16	73	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-22	16	73	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006449962.1	1e-129	myb family transcription factor PHL7 isoform X1
Refseq	XP_006467243.1	1e-129	myb family transcription factor PHL7 isoform X1
Refseq	XP_024951354.1	1e-129	myb family transcription factor PHL7 isoform X1
Swissprot	Q9SJW0	1e-112	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	V4UB20	1e-128	V4UB20_9ROSI; Uncharacterized protein
STRING	XP_006467243.1	1e-129	(Citrus sinensis)
STRING	XP_006449962.1	1e-129	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	4e-91	G2-like family protein

Link Out ? help Back to Top
Phytozome	Kalax.0438s0032.1.p