PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0436s0018.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 400aa    MW: 44328.7 Da    PI: 4.5221
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0436s0018.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2621.3e-19130179255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+G+r+++ +g+W+AeIrdp   gk  r++lg+f taeeAa+a++a +++++g
  Kalax.0436s0018.1.p 130 QYRGIRQRP-WGKWAAEIRDP---GKGVRVWLGTFNTAEEAARAYDAEARRIRG 179
                          69*******.**********8...545*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.97E-22130188IPR016177DNA-binding domain
CDDcd000181.18E-31130188No hitNo description
Gene3DG3DSA:3.30.730.102.6E-32130188IPR001471AP2/ERF domain
SMARTSM003802.3E-38130193IPR001471AP2/ERF domain
PROSITE profilePS5103223.723130187IPR001471AP2/ERF domain
PfamPF008474.3E-12131179IPR001471AP2/ERF domain
PRINTSPR003671.2E-11131142IPR001471AP2/ERF domain
PRINTSPR003671.2E-11153169IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MCGGAIISDF IPSSKSRRLT AEFLWPDQQH KRKSGGWKGS SRFSRQLKPE IVDVADDDDE  60
EDDDDDDFEA DFQGFKDESD DEKGVEVEMR PFDFKATAAK SASSQAPKPV KSAEFNGLAE  120
KSAKRKRKNQ YRGIRQRPWG KWAAEIRDPG KGVRVWLGTF NTAEEAARAY DAEARRIRGN  180
KAKVNFPEES SPTAPKCAPK VNSQSKRSKP SANIYGNRSF GSINKSDQDY FNCLDLMEEK  240
PLNQQYGYMS SFPAADQVAP KSLSPSDAAN THFTSDQGSN SFDCSDFGWG GARTPEITSI  300
LSATLEGDES DFLEEANPTK KSKPVFDNEM PAEENPVEKL SEEFAAYESQ MKLFQIPYDG  360
SSWNASMDNM LNGEITQDAG NPMDLWSFDD ASPTMGGIF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-21130187563ATERF1
3gcc_A9e-21130187563ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021293850.11e-142ethylene-responsive transcription factor RAP2-12-like
TrEMBLD5L1391e-141D5L139_MALDO; AP2 domain class transcription factor
STRINGXP_008340186.11e-140(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14230.32e-67related to AP2 2