PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0434s0024.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WRKY
Protein Properties Length: 319aa    MW: 34427.7 Da    PI: 7.9768
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0434s0024.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.75.8e-29154212158
                          ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                          ++Dgy+WrKYGqK+ ++++ pr+Y++C++a +C+vkkkv+rsaed ++++ tY geHnh
  Kalax.0434s0024.1.p 154 VKDGYQWRKYGQKVTRDNPSPRAYFKCSFApSCQVKKKVQRSAEDLTMLVATYDGEHNH 212
                          58***************************99**************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.5E-28145215IPR003657WRKY domain
PROSITE profilePS5081125.924149215IPR003657WRKY domain
SuperFamilySSF1182906.02E-24150215IPR003657WRKY domain
SMARTSM007749.8E-32154214IPR003657WRKY domain
PfamPF031066.5E-23155212IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MEPSAWIDSS LTLALNLNPH YHPHPAPPPK PQIKEAEELA EELSRVIGEN RKLTEMLAAM  60
YESYTALQTQ FEDLMRRTSA GSAKRKSPES GGDGVQTDQS SSSSDDESNV FKKPRESCSG  120
GNCGGGAVAA GLMSRKPSSR VLVRIDKSDT SLIVKDGYQW RKYGQKVTRD NPSPRAYFKC  180
SFAPSCQVKK KVQRSAEDLT MLVATYDGEH NHLPPSETEL PPHRSPVTTT NSVASSAIGS  240
SKPTVTLDLI QPVEEARLDR AGSGAAEGQD SRPVFQRFIV EQMASSLTND PGFKAAVAAV  300
ISGRMMDGNK GGMLGKWL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-191532161678Probable WRKY transcription factor 4
2lex_A8e-191532161678Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGEOY260522e-79(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31800.21e-61WRKY DNA-binding protein 18