PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0432s0034.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

NAC

Protein Properties

Length: 327aa MW: 36999.8 Da PI: 8.4829

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0432s0034.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	102.3	6.5e-32	9	82	55	129
NAM 55 ekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+dk + + + +++g++ktLvfy+grap+g+ktdW+mheyrle Kalax.0432s0034.1.p 9 QNEWYFFSHKDRKYPTGSRTNRATSAGFWKATGRDKCIRN-SFKKIGMRKTLVFYRGRAPHGQKTDWIMHEYRLE 82 67***********************************9.8899**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	39.888	1	104	IPR003441	NAC domain
SuperFamily	SSF101941	1.02E-36	8	104	IPR003441	NAC domain
Pfam	PF02365	1.8E-15	8	81	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
RCRIGSTPQN EWYFFSHKDR KYPTGSRTNR ATSAGFWKAT GRDKCIRNSF KKIGMRKTLV 60 FYRGRAPHGQ KTDWIMHEYR LEDIDDAQSD SSEDGWVVCR VFKKKNLFKA GNQGSSSTRL 120 HTEHHHHQIP NASIQLNSLR SFSSNSDDQQ QYFLQRHSQL HTSSLNTSQQ AASAGNNNLE 180 GHHIYKPTEL ALHYSHLPMP HYNSLLQVPQ TSLIPSSAHA YSNSAHGLGS DESPVMVKQF 240 MSNPRGQCES GSESMRYQQD RGLEDGTCDG ARPDEGLGEW AMLDRLVTSH QIAGQQHPGD 300 SDRDTHVNHI NQLSLRSEMD FWGYGK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-33	9	106	70	167	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-33	9	106	70	167	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-33	9	106	70	167	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-33	9	106	70	167	NO APICAL MERISTEM PROTEIN
3swm_A	2e-33	9	106	73	170	NAC domain-containing protein 19
3swm_B	2e-33	9	106	73	170	NAC domain-containing protein 19
3swm_C	2e-33	9	106	73	170	NAC domain-containing protein 19
3swm_D	2e-33	9	106	73	170	NAC domain-containing protein 19
3swp_A	2e-33	9	106	73	170	NAC domain-containing protein 19
3swp_B	2e-33	9	106	73	170	NAC domain-containing protein 19
3swp_C	2e-33	9	106	73	170	NAC domain-containing protein 19
3swp_D	2e-33	9	106	73	170	NAC domain-containing protein 19
4dul_A	1e-33	9	106	70	167	NAC domain-containing protein 19
4dul_B	1e-33	9	106	70	167	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269\|PubMed:20197506}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022719841.1	1e-113	protein BEARSKIN2
Swissprot	Q9SV87	9e-92	BRN2_ARATH; Protein BEARSKIN2
TrEMBL	A0A1U7ZH59	1e-110	A0A1U7ZH59_NELNU; protein BEARSKIN2-like
TrEMBL	A0A498IWC7	1e-109	A0A498IWC7_MALDO; Uncharacterized protein
STRING	XP_008391860.1	1e-111	(Malus domestica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G10350.1	4e-94	NAC domain containing protein 70

Link Out ? help Back to Top
Phytozome	Kalax.0432s0034.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Kamiya M, et al. Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis. Development, 2016. 143(21): p. 4063-4072 [PMID:27803060]