PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0425s0033.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRAS
Protein Properties Length: 697aa    MW: 77518.4 Da    PI: 6.3554
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0425s0033.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS400.61.5e-1223066812374
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          v  L++c+ea+ s++  ++++++a+l elasp+g +p+ Rl+ayfte+La r +r +++l++  +p++ +    +e+ ++++l++++sPi
  Kalax.0425s0033.1.p 306 VGDLIDCVEAIGSKNILAINHFIAKLGELASPRGrTPIVRLVAYFTEGLAIRTSRIWPNLFHLATPRDLD-LADDEHGTSFRLLNQISPI 394
                          5689******************************99*************************999999987.6788999999********* PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180
                          +kf h+  N+ +l+a+eg+++vHiiDfdi+qGlQWp+++q+LasR+++p ++RiTgvg+    sk+el+etg+rLa fA ++++pfef++
  Kalax.0425s0033.1.p 395 PKFIHFSSNEILLRAFEGKQKVHIIDFDIKQGLQWPSFFQSLASRSRPPIHVRITGVGE----SKHELNETGDRLAGFAGAMNLPFEFHP 480
                          ***********************************************************....9************************** PP

                 GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270
                           v++rled++l++L+vk+gE++aVn+++qlh++l +s   +   +++L l++s++P+vvv++eqea++n +s+ +r++++l+yysa+fds
  Kalax.0425s0033.1.p 481 -VVDRLEDVRLWMLHVKEGESVAVNCMFQLHKTLYDSSGGAL--RDLLGLIRSTNPTVVVMAEQEASTNFQSLDTRVCNSLKYYSAIFDS 567
                          .7*******************************966655444..89******************************************** PP

                 GRAS 271 leaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee..... 354
                          l+ +lp+ s  +rik E++ +grei+n++aceg+er erhet+ kW++ +++ GF+++++se++  q+++ll++++++ ++v+ +     
  Kalax.0425s0033.1.p 568 LHCSLPSPSaPARIKTEEM-FGREIRNIIACEGSERYERHETFTKWKKLMSDGGFTSMRISEREILQIQMLLKMYSFHRFSVKTQgdgee 656
                          *******9999*******9.********************************************************888****5445555 PP

                 GRAS 355 .....sgslvlgWkdrpLvsvSaWr 374
                                 +l+l W+d+pL++vSaW+
  Kalax.0425s0033.1.p 657 eegatATALTLSWEDEPLYTVSAWT 681
                          6677677888**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.327279651IPR005202Transcription factor GRAS
PfamPF035145.3E-120306681IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 697 aa     Download sequence    Send to blast
MLAGCSSSTL LSPRHRLRIE ASKQFQACHF PLPNSMSTQR LDMQCSFPRR EAAKSQPIRP  60
VGISVDQKPI ESRAGSCSLK QQNIHLPPLA TRPRLSLRGR RETEGGIWAE GNNLKRFAER  120
SPVDRSKKVK RKRGSSSKDV EQSEGAVEGD DDDDASGLRL GQLDGRSFWF QPGFEVSSYL  180
PGLSQPEAPF SLTVSQDEDR VCFVPSEVIS PPPLPLTNNP WIDFGVSKIT HLGDKNVETS  240
HRQPAVREPS ESRTSYESSL SLRLNENPPP VHDSGNGSGN PHPLEGAPAQ VVDESDEEEQ  300
LGFELVGDLI DCVEAIGSKN ILAINHFIAK LGELASPRGR TPIVRLVAYF TEGLAIRTSR  360
IWPNLFHLAT PRDLDLADDE HGTSFRLLNQ ISPIPKFIHF SSNEILLRAF EGKQKVHIID  420
FDIKQGLQWP SFFQSLASRS RPPIHVRITG VGESKHELNE TGDRLAGFAG AMNLPFEFHP  480
VVDRLEDVRL WMLHVKEGES VAVNCMFQLH KTLYDSSGGA LRDLLGLIRS TNPTVVVMAE  540
QEASTNFQSL DTRVCNSLKY YSAIFDSLHC SLPSPSAPAR IKTEEMFGRE IRNIIACEGS  600
ERYERHETFT KWKKLMSDGG FTSMRISERE ILQIQMLLKM YSFHRFSVKT QGDGEEEEGA  660
TATALTLSWE DEPLYTVSAW TPTDAPGASS SFSQRG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-6031268226380Protein SCARECROW
5b3h_A6e-6031268225379Protein SCARECROW
5b3h_D6e-6031268225379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017972132.10.0PREDICTED: scarecrow-like protein 28
SwissprotQ9CAN30.0SCL28_ARATH; Scarecrow-like protein 28
TrEMBLA0A061G6280.0A0A061G628_THECC; GRAS family transcription factor
STRINGEOY246320.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein