PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0424s0025.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | Whirly | ||||||||
Protein Properties | Length: 277aa MW: 30384.7 Da PI: 10.1657 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 193.9 | 2.3e-60 | 102 | 239 | 2 | 139 |
Whirly 2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvr 91 v+k+kaal+v +v+ptf +ldsg l+l+r+G ++l++ +a++erkydWek+qsfalsatev++l+ l++++sceffhdp++k+sn+G+vr Kalax.0424s0025.1.p 102 VFKGKAALSVSPVLPTFRKLDSGGLQLDRRGVMMLKFWPAIGERKYDWEKRQSFALSATEVGSLLTLGPQDSCEFFHDPSMKTSNAGQVR 191 9***************************************************************************************** PP Whirly 92 kalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139 k+l+++ +d sG+f++lsv n+++k+ e+++vP++ aefav+r++++ Kalax.0424s0025.1.p 192 KSLSIKANADNSGYFFSLSVANNILKTSERLTVPITSAEFAVIRTAFN 239 *********************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.31.10 | 2.7E-74 | 89 | 254 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 3.45E-64 | 94 | 258 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 8.4E-60 | 102 | 236 | IPR013742 | Plant transcription factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006281 | Biological Process | DNA repair | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
MAQRLKFIGA LRSKHLFAAS SPTFSIMSHQ FYGNSSEAHQ SRQFLSNEMK LRAPGVMGCS 60 SKSSFTGNSC LYSSLMTCRS LYAQAAASSD NPSSKVYAPY TVFKGKAALS VSPVLPTFRK 120 LDSGGLQLDR RGVMMLKFWP AIGERKYDWE KRQSFALSAT EVGSLLTLGP QDSCEFFHDP 180 SMKTSNAGQV RKSLSIKANA DNSGYFFSLS VANNILKTSE RLTVPITSAE FAVIRTAFNF 240 ALPHIMGWDR IAYQLSAGVS YSTKAAPLVK DIEWDR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3n1h_A | 1e-88 | 95 | 251 | 10 | 166 | StWhy2 |
3n1i_A | 1e-88 | 95 | 251 | 10 | 166 | protein StWhy2 |
3n1j_A | 1e-88 | 95 | 251 | 10 | 166 | Protein StWhy2 |
3n1k_A | 1e-88 | 95 | 251 | 10 | 166 | protein StWhy2 |
3n1l_A | 1e-88 | 95 | 251 | 10 | 166 | protein StWhy2 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Single-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009772795.1 | 6e-94 | PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial isoform X4 | ||||
Refseq | XP_016511182.1 | 6e-94 | PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial isoform X7 | ||||
Swissprot | D9J034 | 6e-93 | WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial | ||||
TrEMBL | A0A1S4DCL3 | 1e-92 | A0A1S4DCL3_TOBAC; single-stranded DNA-bindig protein WHY2, mitochondrial isoform X7 | ||||
TrEMBL | A0A1S4DD98 | 2e-92 | A0A1S4DD98_TOBAC; single-stranded DNA-bindig protein WHY2, mitochondrial isoform X5 | ||||
TrEMBL | A0A1U7WEY8 | 1e-92 | A0A1U7WEY8_NICSY; single-stranded DNA-bindig protein WHY2, mitochondrial isoform X4 | ||||
STRING | XP_009772771.1 | 3e-93 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71260.1 | 1e-86 | WHIRLY 2 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0424s0025.1.p |