PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0424s0012.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | ERF | ||||||||
Protein Properties | Length: 185aa MW: 19914.3 Da PI: 4.5706 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 47.5 | 4.6e-15 | 17 | 64 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr ++ g+Wv+eIr+p++ + r++lg+f +e+Aa+a++ a+ +l+g Kalax.0424s0012.1.p 17 YRGVR--SRGGKWVCEIREPRK---TSRIWLGTFPRPEMAAAAYDVAAIALKG 64 9***6..679*********843...5***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 19.572 | 16 | 72 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.8E-27 | 16 | 78 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.1E-8 | 17 | 64 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-7 | 17 | 28 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.55E-15 | 17 | 74 | No hit | No description |
SuperFamily | SSF54171 | 5.69E-18 | 17 | 74 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.1E-27 | 17 | 74 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-7 | 54 | 74 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MAAPNGAPCK PDQPFSYRGV RSRGGKWVCE IREPRKTSRI WLGTFPRPEM AAAAYDVAAI 60 ALKGKEAILN FPDSARSYPV PVTSSPADIR VAAAAAAAKK QEETSSSSSQ VDDKASTKTD 120 NEEDLTTTLS LSKKSGDQYV DDEEIFEMPS LLVGMAEGMM ISPPRMEEPD NNAEGGSQSL 180 WSYF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-13 | 17 | 72 | 15 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023521236.1 | 7e-57 | ethylene-responsive transcription factor ERF026-like | ||||
Refseq | XP_023521505.1 | 7e-57 | ethylene-responsive transcription factor ERF026-like | ||||
Refseq | XP_023532975.1 | 7e-57 | ethylene-responsive transcription factor ERF026-like | ||||
TrEMBL | B9GW61 | 6e-52 | B9GW61_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s12120.1 | 1e-52 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52020.1 | 1e-34 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0424s0012.1.p |