PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0423s0005.3.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C3H
Protein Properties Length: 386aa    MW: 41570.8 Da    PI: 8.0706
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0423s0005.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.66.4e-11626425
                         ---SGGGGTS--TTTTT-SS-S CS
              zf-CCCH  4 elCrffartGtCkyGdrCkFaH 25
                          lCr+++r G C+yG+rCkF H
  Kalax.0423s0005.3.p  6 QLCRYYQR-GSCQYGARCKFVH 26
                         69******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010316.831229IPR000571Zinc finger, CCCH-type
SMARTSM003568.2E-6328IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-7427IPR000571Zinc finger, CCCH-type
PfamPF006429.0E-9526IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-8629IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005635Cellular Componentnuclear envelope
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MQPSKQLCRY YQRGSCQYGA RCKFVHEIEQ PSKPNNSFGF GVQQNSGSVQ QQNNPFGFGV  60
QSGLNSQSQH SRSAQQQPNP FGFGVKGNNP SSKPFDNKWS RVSANPGTGA AASSRKGDGQ  120
SPAATHSCSD PDSCKKQIAE DFEHERPLWK LTCYSHHKYA PCDITGDVSY EELRMSAYDD  180
AKSGMSFPAI VEKERGLLNA KLVEFEALLR NPYKGPSSSI ATQSPFPQAT PNAFMNNVAS  240
PSVWTFGQPA SSINTGSGFG VVASSNAGLN QTTIFQRSDQ SSTTFGTPNS PFGGSINSTL  300
PSASSFGANK PSFPNSFLTA PFSSASLHAI DPNSASHETV RAVETTGFIN KTQGSDVSVD  360
DKIWLKEKWH PGEIPETPPP ERFIF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028122851.11e-105zinc finger CCCH domain-containing protein 46 isoform X1
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.11e-75C3H family protein