PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0422s0011.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

NF-YA

Protein Properties

Length: 269aa MW: 30437.5 Da PI: 9.1715

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0422s0011.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	104	1.3e-32	173	229	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq+Rak+e+ekkl +ksrkpylheSRh hAlrR+Rg+gGrF Kalax.0422s0011.1.p 173 EEPVFVNAKQYHGILRRRQSRAKAESEKKL-AKSRKPYLHESRHLHALRRARGCGGRF 229 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	4.1E-36	171	232	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	37.422	172	232	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.6E-27	174	229	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	3.0E-23	175	197	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	177	197	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	3.0E-23	206	229	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MFVINSLINF FLILFVIIIN HLQYLWFVCP DYIFNVLGVD TKFPPCYRQI LFGLIMKKNP 60 KITSSVHDPS DYSEAEERQN LTEPQNQATT DVMMSHSGVR APNVQYTTPL QLGTGHNMAP 120 GAYPYPDPYY RSIFAPYDPP SFPSQSYNPQ PMVHMQLMGM QQAGVPLHTD AVEEPVFVNA 180 KQYHGILRRR QSRAKAESEK KLAKSRKPYL HESRHLHALR RARGCGGRFL NGKKNDNQQN 240 EVSTGDSSQL NALDNSSRAN NVQSDGTY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	3e-21	172	237	1	66	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015882438.1	2e-96	nuclear transcription factor Y subunit A-7-like isoform X1
Swissprot	Q84JP1	2e-62	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	A0A314ZUT1	3e-94	A0A314ZUT1_PRUYE; Nuclear transcription factor Y subunit A-7
STRING	VIT_10s0003g04650.t01	1e-94	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	4e-43	nuclear factor Y, subunit A7

Link Out ? help Back to Top
Phytozome	Kalax.0422s0011.1.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]