PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0422s0008.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB | ||||||||
Protein Properties | Length: 266aa MW: 29257.7 Da PI: 7.4639 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31 | 5.8e-10 | 7 | 56 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT.......-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg.......tWktIartmgkgRtlkqcksrwqk 46 +WT +Ed+ + da++ + + +W++Ia ++ +++ q+k++++ Kalax.0422s0008.1.p 7 AWTRDEDKAFEDAIATHWIEnledsdeHWEKIAVAVP-TKSIHQLKHHYRL 56 8*****************99*****************.***********96 PP | |||||||
2 | Myb_DNA-binding | 39.2 | 1.6e-12 | 124 | 168 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + ++G+g+W++I+r + Rt+ q+ s+ qky Kalax.0422s0008.1.p 124 PWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKY 168 7*****************************99************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 6.794 | 3 | 62 | IPR017884 | SANT domain |
SMART | SM00717 | 7.8E-6 | 4 | 60 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.9E-5 | 6 | 58 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.03E-8 | 6 | 65 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.55E-7 | 7 | 58 | No hit | No description |
Pfam | PF00249 | 1.0E-6 | 7 | 56 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 18.034 | 117 | 173 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.18E-17 | 119 | 174 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-10 | 121 | 171 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 3.4E-17 | 121 | 171 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 5.3E-11 | 122 | 167 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.99E-10 | 124 | 169 | No hit | No description |
Pfam | PF00249 | 6.1E-11 | 124 | 168 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MTSSSSAWTR DEDKAFEDAI ATHWIENLED SDEHWEKIAV AVPTKSIHQL KHHYRLLVDD 60 VKDIDAGIIP LPEYVGDDNW PSSSSKKSTA FADNISKKSN GNFPGNESNG KAGRSEQERR 120 KGIPWTEEEH RLFLLGLDKF GKGDWRSISR NFVISRTPTQ VASHAQKYFI RLSSMNRDRR 180 RSSIHDITSV NNGDISTHEP PITGQPGSTN PNIGGIVKGM YGGPVGQVVG APVGHVAAVG 240 TPVMMPPYVV PVPYPVAPQR MHQQS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021983810.1 | 1e-111 | transcription factor MYBS1 | ||||
Swissprot | Q9FNN6 | 6e-79 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | A0A251TYS3 | 1e-109 | A0A251TYS3_HELAN; Putative duplicated homeodomain-like superfamily protein | ||||
STRING | XP_002511974.1 | 1e-109 | (Ricinus communis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 1e-67 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0422s0008.1.p |
Publications ? help Back to Top | |||
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