PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0421s0031.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | TCP | ||||||||
Protein Properties | Length: 406aa MW: 44087.1 Da PI: 7.3073 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 117.3 | 1.9e-36 | 37 | 153 | 2 | 104 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............ssssaseceaes 77 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai+el+++ ++++ +++++++ Kalax.0421s0031.1.p 37 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELAELppwhptgttiiptaTTTATNASSQQE 126 79**************************************************************99998887655543222222222222 PP TCP 78 ssssasnsssg.......kaaksaakskksqksa 104 + + + a+ + +++++++ Kalax.0421s0031.1.p 127 RMI-------HgqvansmEDANGYTIQHQQHERV 153 222.......233322222233332222222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.0E-34 | 37 | 150 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 34.295 | 39 | 97 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 406 aa Download sequence Send to blast |
MGERSSQQRQ TTSRLGMRNS GGGEIIEVQG GHIVRSTGRK DRHSKVCTAK GPRDRRVRLS 60 AHTAIQFYDV QDRLGYDRPS KAVDWLIKKA KAAIDELAEL PPWHPTGTTI IPTATTTATN 120 ASSQQERMIH GQVANSMEDA NGYTIQHQQH ERVENENNPS FLPPSMDSDS IADTIKTFFP 180 VGASAEPTSG SGMQFYPPDL LSRTSSSQNN QDLRLSLQSF QDSQFLHSHH HQQHPGQTPQ 240 AIFSGNQLGF DASSGGGGWS DHQSTDINRF HRLMAWNNAG GDSAGGSGGG GGSGGFMFNS 300 LPPPPLSQPS LQQLFGQSGH FFTQRGPLQS SNTSSVRAWI DQPIANHHQH HQTLHDHSST 360 LSGIGNFQIP GAFPGFRIPA RIQGDNEEQD NIHNKPSSAS SDSRH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 7e-21 | 44 | 97 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 7e-21 | 44 | 97 | 1 | 54 | Putative transcription factor PCF6 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164) (PubMed:12931144, PubMed:17307931). Required during early steps of embryogenesis (PubMed:15634699). Participates in ovule develpment (PubMed:25378179). Activates LOX2 expression by binding to the 5'-GGACCA-3' motif found in its promoter (PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18816164, ECO:0000269|PubMed:25378179}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00009 | PBM | Transfer from 929286 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the miRNA miR-JAW/miR319 (PubMed:12931144, PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:18816164}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011082737.1 | 1e-136 | transcription factor TCP4-like | ||||
Refseq | XP_011082738.1 | 1e-136 | transcription factor TCP4-like | ||||
Refseq | XP_021652538.1 | 1e-136 | transcription factor TCP4 | ||||
Swissprot | Q8LPR5 | 1e-102 | TCP4_ARATH; Transcription factor TCP4 | ||||
TrEMBL | A0A2K2CA04 | 1e-130 | A0A2K2CA04_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s38480.1 | 1e-130 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 1e-85 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0421s0031.1.p |