PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0412s0024.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GATA
Protein Properties Length: 86aa    MW: 9653.37 Da    PI: 11.0688
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0412s0024.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA45.88.4e-154477134
                 GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                         C  Cg t+Tp W rgp+g+ tLCn CGl++ ++ 
  Kalax.0412s0024.1.p 44 CKECGRTETPTWLRGPSGPQTLCNRCGLRFSREQ 77
                         9*****************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011410.663871IPR000679Zinc finger, GATA-type
SMARTSM004018.7E-63885IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.66E-114177No hitNo description
Gene3DG3DSA:3.30.50.105.1E-134279IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.67E-84373No hitNo description
PfamPF003205.3E-124476IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 86 aa     Download sequence    Send to blast
MGEKMGNKLI PHLNWVFPNF TKKPKISNPK PKSKPQMAVL SRICKECGRT ETPTWLRGPS  60
GPQTLCNRCG LRFSREQKKA KNAET*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36620.12e-12GATA transcription factor 19