PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0410s0021.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | NF-YC | ||||||||
Protein Properties | Length: 221aa MW: 24085.2 Da PI: 5.2521 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 179.2 | 3.8e-56 | 38 | 142 | 1 | 102 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd 87 ql++fw++q ie+++dfknh+lPlarikki+kadedv+misaeaP+l+skacelfilelt+rswlhaeenkrrtl+k+diaaa+trtd Kalax.0410s0021.1.p 38 QLQMFWAYQrqeIEQVSDFKNHQLPLARIKKIMKADEDVRMISAEAPILFSKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTD 127 89****9998899***************************************************************************** PP NF-YC 88 ifdflvdivprdelk 102 ifdflvdivprde+k Kalax.0410s0021.1.p 128 IFDFLVDIVPRDEIK 142 ************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 2.51E-34 | 11 | 132 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 5.1E-37 | 52 | 124 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.9E-20 | 60 | 123 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MDSHHQQQQV GQQPPPPAPA VGAPAPFHHQ LQQQQQQQLQ MFWAYQRQEI EQVSDFKNHQ 60 LPLARIKKIM KADEDVRMIS AEAPILFSKA CELFILELTI RSWLHAEENK RRTLQKNDIA 120 AAITRTDIFD FLVDIVPRDE IKEEVGVGGL VGGTVPFYYP AMGQPAGMMM GRPVGDPAGG 180 AYLAAPSQAW QSVWQTAGAD EGAYGSGGGN GGPQQGNVDG * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 6e-55 | 46 | 138 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 110 | 116 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000250, ECO:0000269|PubMed:17322342}. | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022736089.1 | 1e-108 | nuclear transcription factor Y subunit C-1-like | ||||
Swissprot | Q9FMV5 | 2e-90 | NFYC4_ARATH; Nuclear transcription factor Y subunit C-4 | ||||
Swissprot | Q9SMP0 | 2e-90 | NFYC1_ARATH; Nuclear transcription factor Y subunit C-1 | ||||
TrEMBL | A0A0D2LVC8 | 1e-102 | A0A0D2LVC8_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.001G058500.1 | 1e-103 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48590.1 | 4e-78 | nuclear factor Y, subunit C1 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0410s0021.1.p |