PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0407s0033.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | G2-like | ||||||||
Protein Properties | Length: 422aa MW: 44917.5 Da PI: 6.8648 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 83 | 3.2e-26 | 162 | 215 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k +++WtpeLH+rFv+aveqLG ekA+P++ile+m+ +gLt+++++SHLQkYR++ Kalax.0407s0033.1.p 162 KVKVDWTPELHKRFVQAVEQLG--EKAVPSRILEIMGTDGLTRHNIASHLQKYRSH 215 5689*****************4..88****************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.29 | 159 | 217 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.4E-25 | 160 | 218 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.27E-15 | 161 | 218 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.4E-25 | 162 | 215 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.0E-10 | 165 | 213 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 422 aa Download sequence Send to blast |
MQMLVASSSS LRDTATKSDD NPETIESGMD EFSDCFSAGS LLDSIDFDEL FAGLDGDPDA 60 LPDLEILGDY SISGGTADDR GQSSDDGNDA VSGSASGSPF RSGSGLDAGS VCSPGEGVVD 120 KAGDMDVKKD GPEGHFGKVK KSAASAGKAG RSKARGSDGN RKVKVDWTPE LHKRFVQAVE 180 QLGEKAVPSR ILEIMGTDGL TRHNIASHLQ KYRSHRKHLI AREAEAASWN QRRHMYGGAR 240 GGGMGKRVAV SPWLLPTIGY PPAMSGPMHH HPTVRPLHVW GHPSGDPSQT STMWPKHILP 300 HQLRPPHLHP RPVWAPPHLP YGQSQGMPCY PPPPQRFMAP PVPGIPHHAM YKTDPRAAAA 360 GPATILHQPL DSSPSNESID AALEDVLAKP WLPLPIGLKA PAIDTVVGEL QRQGVPQIPP 420 S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 2e-14 | 167 | 217 | 6 | 57 | Transcription factor LUX |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007132777.1 | 1e-115 | hypothetical protein PHAVU_011G124200g | ||||
TrEMBL | V7AKX5 | 1e-113 | V7AKX5_PHAVU; Uncharacterized protein | ||||
STRING | XP_007132777.1 | 1e-114 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20570.1 | 7e-59 | GBF's pro-rich region-interacting factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0407s0033.1.p |