PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0402s0015.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | CO-like | ||||||||
Protein Properties | Length: 396aa MW: 43858.8 Da PI: 5.8316 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 20.3 | 1.2e-06 | 46 | 89 | 4 | 41 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41 +C++++ +++ l C + ++ lC++C ++H g H++++ Kalax.0402s0015.3.p 46 LVCQRCHAQPAALQCIEERVSLCQSCDWTGH-GastsgaaHKRRN 89 68*****************************.5588888898765 PP | |||||||
2 | CCT | 58.2 | 3e-20 | 338 | 381 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R +a+lRYkeK+k RkFeK++rY sRK++A+ R+RvKGrFvk+ Kalax.0402s0015.3.p 338 RSKAVLRYKEKKKMRKFEKTVRYVSRKERADIRKRVKGRFVKAG 381 889**************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.058 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 6.29E-8 | 4 | 47 | No hit | No description |
SMART | SM00336 | 7.3E-7 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 8.759 | 43 | 90 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 0.00538 | 47 | 76 | No hit | No description |
SMART | SM00336 | 3.6 | 48 | 90 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 14.684 | 338 | 380 | IPR010402 | CCT domain |
Pfam | PF06203 | 4.7E-15 | 338 | 380 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 396 aa Download sequence Send to blast |
MGYKCDFCCN RRSVVYCRSD DACLCLDCDT SVHAANSLSR RHSRTLVCQR CHAQPAALQC 60 IEERVSLCQS CDWTGHGAST SGAAHKRRNI KFYSDCPSAA ELQSMWSYDS ESVSVSGSIS 120 IGEHEMGLMS ITDGNVKQAK LSTTEVDQLC NVNPDQVWNS STQDLDSSFS NASHETEIVN 180 TPQPKLSFPE AVNPTGDDDL FVDFDMDESE LNLENYEELF RVNLSQSEEL LENGGIDSLF 240 EPRNKSLTEL NCHGTLASQK VASAAQPGCS KALSFDSMMT SKTEPVIHFK QRQSSSTLSF 300 SGDGGGDFID CGTSSMISLG EHPWCPSFQE SPSPSTNRSK AVLRYKEKKK MRKFEKTVRY 360 VSRKERADIR KRVKGRFVKA GETYDYDPLS QTKSC* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015880870.1 | 1e-145 | zinc finger protein CONSTANS-LIKE 9-like | ||||
Refseq | XP_015880871.1 | 1e-145 | zinc finger protein CONSTANS-LIKE 9-like | ||||
Refseq | XP_024928499.1 | 1e-145 | zinc finger protein CONSTANS-LIKE 9-like | ||||
Swissprot | Q9SSE5 | 1e-113 | COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9 | ||||
TrEMBL | A0A061DL86 | 1e-144 | A0A061DL86_THECC; B-box type zinc finger protein with CCT domain isoform 1 | ||||
STRING | EOX93573 | 1e-145 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48250.1 | 6e-80 | B-box type zinc finger protein with CCT domain |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0402s0015.3.p |