PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0402s0015.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family CO-like
Protein Properties Length: 519aa    MW: 58053.6 Da    PI: 7.8683
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0402s0015.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.71.7e-06169212441
             zf-B_box   4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41 
                           +C++++ +++ l C + ++ lC++C  ++H g       H++++
  Kalax.0402s0015.1.p 169 LVCQRCHAQPAALQCIEERVSLCQSCDWTGH-GastsgaaHKRRN 212
                          68*****************************.5588888898765 PP
2CCT57.74.3e-20461504144
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                          R +a+lRYkeK+k RkFeK++rY sRK++A+ R+RvKGrFvk+ 
  Kalax.0402s0015.1.p 461 RSKAVLRYKEKKKMRKFEKTVRYVSRKERADIRKRVKGRFVKAG 504
                          889**************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.6E-9123170IPR000315B-box-type zinc finger
CDDcd000214.48E-8127170No hitNo description
PROSITE profilePS501199.044128170IPR000315B-box-type zinc finger
PROSITE profilePS501198.759166213IPR000315B-box-type zinc finger
CDDcd000210.00482170211No hitNo description
SMARTSM003363.6171213IPR000315B-box-type zinc finger
PfamPF062036.7E-15461503IPR010402CCT domain
PROSITE profilePS5101714.684461503IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MRSMNVPPPF FLLFSFIFIS ISISIRARCL FLALFLSRFS FLSRAFVFTS AKSDPNPFTP  60
QRRVERFFRK APPFSARRAS TSYITLSEAE DARKLPYLPF CQTRIAFIFF KKCSSGRDAV  120
ISIMGYKCDF CCNRRSVVYC RSDDACLCLD CDTSVHAANS LSRRHSRTLV CQRCHAQPAA  180
LQCIEERVSL CQSCDWTGHG ASTSGAAHKR RNIKFYSDCP SAAELQSMWS YDSESVSVSG  240
SISIGEHEMG LMSITDGNVK QAKLSTTEVD QLCNVNPDQV WNSSTQDLDS SFSNASHETE  300
IVNTPQPKLS FPEAVNPTGD DDLFVDFDMD ESELNLENYE ELFRVNLSQS EELLENGGID  360
SLFEPRNKSL TELNCHGTLA SQKVASAAQP GCSKALSFDS MMTSKTEPVI HFKQRQSSST  420
LSFSGDGGGD FIDCGTSSMI SLGEHPWCPS FQESPSPSTN RSKAVLRYKE KKKMRKFEKT  480
VRYVSRKERA DIRKRVKGRF VKAGETYDYD PLSQTKSC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015880870.11e-144zinc finger protein CONSTANS-LIKE 9-like
RefseqXP_015880871.11e-144zinc finger protein CONSTANS-LIKE 9-like
RefseqXP_024928499.11e-144zinc finger protein CONSTANS-LIKE 9-like
SwissprotQ9SSE51e-111COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A061DL861e-142A0A061DL86_THECC; B-box type zinc finger protein with CCT domain isoform 1
STRINGEOX935731e-143(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.12e-78B-box type zinc finger protein with CCT domain