PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0401s0003.3.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

CAMTA

Protein Properties

Length: 901aa MW: 100327 Da PI: 6.2301

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0401s0003.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	149.2	1e-46	13	128	3	117
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseen 91 +e + rwlk+ e++ i++n e +l+++++++p+sg+++Lyn++++r+fr DG++w+kk+dg+tv E+he+LKv++ve+l+cyYa++een Kalax.0401s0003.3.p 13 REaEVRWLKPAEVYYIIQNCEDRHLQSKSAKKPPSGTFFLYNKRVLRNFRGDGHNWRKKRDGRTVGEAHERLKVDNVEALNCYYARGEEN 102 55589***************999************************************************************* PP CG-1 92 ptfqrrcywlLeeelekivlvhylev 117 ++f+rr++w+L e+++ivlv+yl+v Kalax.0401s0003.3.p 103 SSFRRRSFWMLSGERSHIVLVQYLDV 128 *********************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	62.948	8	134	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	1.8E-52	11	129	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	6.4E-41	15	128	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	7.8E-12	349	437	IPR013783	Immunoglobulin-like fold
CDD	cd00102	7.78E-5	351	435	No hit	No description
SuperFamily	SSF81296	1.54E-18	351	435	IPR014756	Immunoglobulin E-set
Pfam	PF01833	1.4E-8	351	434	IPR002909	IPT domain
Gene3D	G3DSA:1.25.40.20	1.7E-15	550	645	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	14.318	551	643	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	1.87E-16	555	645	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	3.83E-15	556	643	No hit	No description
Pfam	PF12796	7.7E-8	571	644	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	9.938	584	616	IPR002110	Ankyrin repeat
SMART	SM00248	0.0014	584	619	IPR002110	Ankyrin repeat
SMART	SM00248	2700	623	652	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	1.27E-7	701	806	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	11	701	723	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.529	702	731	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.12	757	779	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.608	758	787	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.0069	760	778	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0014	780	802	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.974	782	807	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	7.2E-5	783	802	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 901 aa Download sequence Send to blast
MQSAEFDINE LVREAEVRWL KPAEVYYIIQ NCEDRHLQSK SAKKPPSGTF FLYNKRVLRN 60 FRGDGHNWRK KRDGRTVGEA HERLKVDNVE ALNCYYARGE ENSSFRRRSF WMLSGERSHI 120 VLVQYLDVAN QSPGSVSQPS FLLSPPSSLS PGISSATNQE FVSVSGGYDS NINLPSPVSA 180 EIGFEVGISN NMVEVNQASG HLEKQLSLNY ENLNGINSLS SQEGMLNSSN FEGYGMEIAN 240 QVWLDSLLDG SDYAACDGDS GMGRQQTSGR DEDCVSWTDV ANFGEDEQIS LELHEMFPLN 300 TDRFEGPPFS SFTSSQQRNL GYQGKYFETD QTLIQPQANS NLFIDQNQKF TIRDVSPEWG 360 YSFETTKVII VGSFLCHPSE HVWTCMFGGI EVPIEIIQEG VILCEAPPNP SGKVTLCVTS 420 GNRETCSEVR EFEYRNKTGI CAQCSASKKE TTMSSEELLL LVRLAQMLIC DYSLGQRGGD 480 SKELGNGLSE KRNSDEDSWS LILESLLVGS GTFAGTIYWL LEEFLKEKLV RWISSKTQEP 540 TGESTCLLSR KEQGIIHMIA GLGYEWALAP ILSSGVGINF RDINGWTALH WAARFGREKM 600 VACLIASGAL AGALTDPNVQ DPTGKTAASI AAINGHKGLA GYLSEVALTS HLSSLKLQES 660 ELSKELAVSE AEHTVNCIAE ANMNTTEDQL SLNDTLTAVR NAASAAARIQ AAFRAHSFRK 720 RQQEKAFKTI SIDDYGISSD VQVLSAVSKL AFRNTRDHNS AALSIQKKYR GYKGRKEFLD 780 FRQKVVKIQA HVRGHQTRKN YKVCWAAGIL EKIILRWLRK GVGLRGFKPE LETIDEIDEE 840 DFAKVFRKKN VEAALEEAVA RVLSMVASPE ARQQYRRMLE RYRQAKAHLG NAANERLQHL 900 *

Sequence ? help Back to Top

Protein Sequence Length: 901 aa Download sequence Send to blast

MQSAEFDINE LVREAEVRWL KPAEVYYIIQ NCEDRHLQSK SAKKPPSGTF FLYNKRVLRN  60
FRGDGHNWRK KRDGRTVGEA HERLKVDNVE ALNCYYARGE ENSSFRRRSF WMLSGERSHI  120
VLVQYLDVAN QSPGSVSQPS FLLSPPSSLS PGISSATNQE FVSVSGGYDS NINLPSPVSA  180
EIGFEVGISN NMVEVNQASG HLEKQLSLNY ENLNGINSLS SQEGMLNSSN FEGYGMEIAN  240
QVWLDSLLDG SDYAACDGDS GMGRQQTSGR DEDCVSWTDV ANFGEDEQIS LELHEMFPLN  300
TDRFEGPPFS SFTSSQQRNL GYQGKYFETD QTLIQPQANS NLFIDQNQKF TIRDVSPEWG  360
YSFETTKVII VGSFLCHPSE HVWTCMFGGI EVPIEIIQEG VILCEAPPNP SGKVTLCVTS  420
GNRETCSEVR EFEYRNKTGI CAQCSASKKE TTMSSEELLL LVRLAQMLIC DYSLGQRGGD  480
SKELGNGLSE KRNSDEDSWS LILESLLVGS GTFAGTIYWL LEEFLKEKLV RWISSKTQEP  540
TGESTCLLSR KEQGIIHMIA GLGYEWALAP ILSSGVGINF RDINGWTALH WAARFGREKM  600
VACLIASGAL AGALTDPNVQ DPTGKTAASI AAINGHKGLA GYLSEVALTS HLSSLKLQES  660
ELSKELAVSE AEHTVNCIAE ANMNTTEDQL SLNDTLTAVR NAASAAARIQ AAFRAHSFRK  720
RQQEKAFKTI SIDDYGISSD VQVLSAVSKL AFRNTRDHNS AALSIQKKYR GYKGRKEFLD  780
FRQKVVKIQA HVRGHQTRKN YKVCWAAGIL EKIILRWLRK GVGLRGFKPE LETIDEIDEE  840
DFAKVFRKKN VEAALEEAVA RVLSMVASPE ARQQYRRMLE RYRQAKAHLG NAANERLQHL  900
*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:25039701, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:28351986}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022725126.1	0.0	calmodulin-binding transcription activator 4-like isoform X3
Swissprot	Q9FYG2	0.0	CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBL	D7TB03	0.0	D7TB03_VITVI; Uncharacterized protein
STRING	VIT_01s0010g03850.t01	0.0	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	0.0	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Link Out ? help Back to Top
Phytozome	Kalax.0401s0003.3.p

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]