PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0401s0003.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

CAMTA

Protein Properties

Length: 918aa MW: 102057 Da PI: 6.2023

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0401s0003.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	149.2	1e-46	13	128	3	117
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseen 91 +e + rwlk+ e++ i++n e +l+++++++p+sg+++Lyn++++r+fr DG++w+kk+dg+tv E+he+LKv++ve+l+cyYa++een Kalax.0401s0003.1.p 13 REaEVRWLKPAEVYYIIQNCEDRHLQSKSAKKPPSGTFFLYNKRVLRNFRGDGHNWRKKRDGRTVGEAHERLKVDNVEALNCYYARGEEN 102 55589***************999************************************************************* PP CG-1 92 ptfqrrcywlLeeelekivlvhylev 117 ++f+rr++w+L e+++ivlv+yl+v Kalax.0401s0003.1.p 103 SSFRRRSFWMLSGERSHIVLVQYLDV 128 *********************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	62.948	8	134	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	1.8E-52	11	129	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	6.6E-41	15	128	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	8.0E-12	366	454	IPR013783	Immunoglobulin-like fold
Pfam	PF01833	1.4E-8	368	451	IPR002909	IPT domain
CDD	cd00102	7.96E-5	368	452	No hit	No description
SuperFamily	SSF81296	1.54E-18	368	452	IPR014756	Immunoglobulin E-set
Gene3D	G3DSA:1.25.40.20	1.7E-15	567	662	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	14.318	568	660	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	1.87E-16	572	662	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	3.94E-15	573	660	No hit	No description
Pfam	PF12796	7.9E-8	588	661	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	0.0014	601	636	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	9.938	601	633	IPR002110	Ankyrin repeat
SMART	SM00248	2700	640	669	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	1.17E-7	718	823	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	11	718	740	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.529	719	748	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.12	774	796	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.608	775	804	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.007	777	795	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0014	797	819	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.974	799	824	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	7.3E-5	800	819	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 918 aa Download sequence Send to blast
MQSAEFDINE LVREAEVRWL KPAEVYYIIQ NCEDRHLQSK SAKKPPSGTF FLYNKRVLRN 60 FRGDGHNWRK KRDGRTVGEA HERLKVDNVE ALNCYYARGE ENSSFRRRSF WMLSGERSHI 120 VLVQYLDVAN QSPGSVSQPS FLLSPPSSLS PGISSATNQE FVSVSGGYDS NINLPSPVSA 180 EIGFEVGISN NMVEVNQASG HLEKQLSLNY ENLNGINSLS SQEGMLNSSN FEGYGMEIAN 240 QVWLDSLLDG SDYAACDGGY AGLQNGFNSL LHEAGDSGMG RQQTSGRDED CVSWTDVANF 300 GEDEQISLEL HEMFPLNTDR FEGPPFSSFT SSQQRNLGYQ GKYFETDQTL IQPQANSNLF 360 IDQNQKFTIR DVSPEWGYSF ETTKVIIVGS FLCHPSEHVW TCMFGGIEVP IEIIQEGVIL 420 CEAPPNPSGK VTLCVTSGNR ETCSEVREFE YRNKTGICAQ CSASKKETTM SSEELLLLVR 480 LAQMLICDYS LGQRGGDSKE LGNGLSEKRN SDEDSWSLIL ESLLVGSGTF AGTIYWLLEE 540 FLKEKLVRWI SSKTQEPTGE STCLLSRKEQ GIIHMIAGLG YEWALAPILS SGVGINFRDI 600 NGWTALHWAA RFGREKMVAC LIASGALAGA LTDPNVQDPT GKTAASIAAI NGHKGLAGYL 660 SEVALTSHLS SLKLQESELS KELAVSEAEH TVNCIAEANM NTTEDQLSLN DTLTAVRNAA 720 SAAARIQAAF RAHSFRKRQQ EKAFKTISID DYGISSDVQV LSAVSKLAFR NTRDHNSAAL 780 SIQKKYRGYK GRKEFLDFRQ KVVKIQAHVR GHQTRKNYKV CWAAGILEKI ILRWLRKGVG 840 LRGFKPELET IDEIDEEDFA KVFRKKNVEA ALEEAVARVL SMVASPEARQ QYRRMLERYR 900 QAKAHLGNAA NERLQHL*

Sequence ? help Back to Top

Protein Sequence Length: 918 aa Download sequence Send to blast

MQSAEFDINE LVREAEVRWL KPAEVYYIIQ NCEDRHLQSK SAKKPPSGTF FLYNKRVLRN  60
FRGDGHNWRK KRDGRTVGEA HERLKVDNVE ALNCYYARGE ENSSFRRRSF WMLSGERSHI  120
VLVQYLDVAN QSPGSVSQPS FLLSPPSSLS PGISSATNQE FVSVSGGYDS NINLPSPVSA  180
EIGFEVGISN NMVEVNQASG HLEKQLSLNY ENLNGINSLS SQEGMLNSSN FEGYGMEIAN  240
QVWLDSLLDG SDYAACDGGY AGLQNGFNSL LHEAGDSGMG RQQTSGRDED CVSWTDVANF  300
GEDEQISLEL HEMFPLNTDR FEGPPFSSFT SSQQRNLGYQ GKYFETDQTL IQPQANSNLF  360
IDQNQKFTIR DVSPEWGYSF ETTKVIIVGS FLCHPSEHVW TCMFGGIEVP IEIIQEGVIL  420
CEAPPNPSGK VTLCVTSGNR ETCSEVREFE YRNKTGICAQ CSASKKETTM SSEELLLLVR  480
LAQMLICDYS LGQRGGDSKE LGNGLSEKRN SDEDSWSLIL ESLLVGSGTF AGTIYWLLEE  540
FLKEKLVRWI SSKTQEPTGE STCLLSRKEQ GIIHMIAGLG YEWALAPILS SGVGINFRDI  600
NGWTALHWAA RFGREKMVAC LIASGALAGA LTDPNVQDPT GKTAASIAAI NGHKGLAGYL  660
SEVALTSHLS SLKLQESELS KELAVSEAEH TVNCIAEANM NTTEDQLSLN DTLTAVRNAA  720
SAAARIQAAF RAHSFRKRQQ EKAFKTISID DYGISSDVQV LSAVSKLAFR NTRDHNSAAL  780
SIQKKYRGYK GRKEFLDFRQ KVVKIQAHVR GHQTRKNYKV CWAAGILEKI ILRWLRKGVG  840
LRGFKPELET IDEIDEEDFA KVFRKKNVEA ALEEAVARVL SMVASPEARQ QYRRMLERYR  900
QAKAHLGNAA NERLQHL*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:25039701, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:28351986}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022725126.1	0.0	calmodulin-binding transcription activator 4-like isoform X3
Swissprot	Q9FYG2	0.0	CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBL	D7TB03	0.0	D7TB03_VITVI; Uncharacterized protein
STRING	VIT_01s0010g03850.t01	0.0	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	0.0	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Link Out ? help Back to Top
Phytozome	Kalax.0401s0003.1.p

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]