PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0398s0008.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | C2H2 | ||||||||
Protein Properties | Length: 524aa MW: 58399.7 Da PI: 6.104 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 21 | 8.8e-07 | 274 | 295 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H Kalax.0398s0008.1.p 274 FCTICGKGFKRDANLRMHMRGH 295 6*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.6E-5 | 272 | 297 | No hit | No description |
SMART | SM00355 | 0.0026 | 273 | 295 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 12.03 | 273 | 300 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.1E-5 | 274 | 324 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 275 | 295 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 75 | 322 | 355 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 27 | 360 | 382 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 524 aa Download sequence Send to blast |
MERKDRIHTE NWMRSGVVEN QFSQKSSPDC QYFSIPNQHS DLVEWKNSPF MDYEMRTHES 60 ASGSIPNSNH TSSTLGDRNR LPKIPDNMNA QSNPVLQAGA NANWDPNAML NNLSFLEVKI 120 HQLQDMVHLI VGCECQVANG LDEVTAQQQQ LISADLTSII VQLISTAGSL LPSVTQNILA 180 ANPAIGQLDG ILFPSENGMR SNILPPCNGG AQLDELSKQS DALVKNQVTE QNSLVDDHEM 240 KDEEDVEEGE HLPPGSYEIL QLEKDEILAP HTHFCTICGK GFKRDANLRM HMRGHGDEYK 300 SPAALAKPNK ECTLEPVLIK RYSCPYFGCK RNKDHRKFQP LKTILCVKNH YKRSHCDKSF 360 TCSRCNTKKF SVIADLKTHE KHCGRDKWLC SCGTTFSRKD KLFGHIALFQ GHTPAIPLDD 420 KILAGTDQGE SSKLTSKVSG IQFNFSTNAP ISCGTSNQNM MDFKANLDDP VPCFSPVSFD 480 PCNLLAFNEF PRTTFEDSDT SFSFLIPGSF DYDQKSEGDS ELK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Together with STOP2, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:17535918, ECO:0000269|PubMed:18826429, ECO:0000269|PubMed:19321711, ECO:0000269|PubMed:23935008}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By shock H(+) and Al(3+) treatments. {ECO:0000269|PubMed:17535918}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021647541.1 | 0.0 | protein SENSITIVE TO PROTON RHIZOTOXICITY 1 | ||||
Refseq | XP_021647542.1 | 0.0 | protein SENSITIVE TO PROTON RHIZOTOXICITY 1 | ||||
Swissprot | Q9C8N5 | 1e-179 | STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 | ||||
TrEMBL | A5BSF5 | 0.0 | A5BSF5_VITVI; Uncharacterized protein | ||||
STRING | VIT_18s0072g00840.t01 | 0.0 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34370.2 | 1e-169 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0398s0008.1.p |