PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0396s0026.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 489aa    MW: 55202.1 Da    PI: 4.6857
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0396s0026.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.83.5e-12252295654
                          HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                           e+ErrRR+++N+++ +Lr+l+P  +      Kl+Ka+iL  A+ Y+k+L
  Kalax.0396s0026.1.p 252 LEAERRRRKKLNERLYNLRSLVPIiS------KLDKASILVDAITYVKDL 295
                          589*********************66......****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142157.3E-186155IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000833.56E-14243300No hitNo description
PROSITE profilePS5088816.564246295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.06E-17248311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.0E-10251295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-14252301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.0E-16253311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.596387459IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0003677Molecular FunctionDNA binding
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MRSFMERLRD LVGNNGWDYC VVWRLNEDQR VIEWLDCCCA SAAVNSLDKQ DELMFPVSSV  60
FCCRDAVFQH QRTQCCDFLS QLPSSVSLDD SGIYAQVLFS NQPRWLNFFN NPDQENPSGE  120
IHATRVLIPV PGALVELFAA KQVFEDQQVV DFVMSHCSNQ LELQAFFNSG LPSSTHGAHD  180
NGYGMEAMMT HDGSDLPREP SGGHSKDLNE KDSVKPEMGR SDSISDCSDQ IDDEDDAGCR  240
KRNGKRPQAK NLEAERRRRK KLNERLYNLR SLVPIISKLD KASILVDAIT YVKDLKKQEK  300
ELQDELEELS NDEDVRNNGT ANIEAPTDFM SYPDDLNAPN NLLFGAIDSM QPCTLITRTH  360
EAATEDDKVQ QMEPQVEVTL INANKFFIKV FCEHKPGRLV RLLEFLNSLG LEVTNVNVTS  420
CKKLVSNLFE VELKRDSEVV ADDLKNSLLE LTRIPLSSGW MHDQIPSKPG NGVDIYQCHH  480
GIPYHLQN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-12244316275Transcription factor MYC2
5gnj_B2e-12244316275Transcription factor MYC2
5gnj_E2e-12244316275Transcription factor MYC2
5gnj_F2e-12244316275Transcription factor MYC2
5gnj_G2e-12244316275Transcription factor MYC2
5gnj_I2e-12244316275Transcription factor MYC2
5gnj_M2e-12244316275Transcription factor MYC2
5gnj_N2e-12244316275Transcription factor MYC2
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1239260RKRNGKRPQAKNLEAERRRRKK
2254261ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015576045.11e-139transcription factor ABORTED MICROSPORES isoform X2
TrEMBLA0A2N9FLJ01e-149A0A2N9FLJ0_FAGSY; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.11e-39bHLH family protein